Search result

BaseInfo

ncRNA ID	ath-miR8183
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr3:11747715-11747831 [-]
Reference genome	TAIR10
Source	miRBase
Length	21
Mature sequence(if miRNA)	85 - UUUAGUUGACGGAAUUGUGGC - 105
Stem-loop(if miRNA)	U  C          C       ACAAUUC     C   UU AGAAGUUAGGGUUUUAGU GA GGAAUUGUGG GGGAUCU       UUCUU UUC  C |||||||||||||||||| || |||||||||| |||||||       ||||| |||  U UCUUCAAUCCCAAAAUCA CU CCUUAAUACC CCCUAGA       AAGAA AAG  U                   C  C          U       -AACCCA     -   UC
Stem-loop sequence	AGAAGUUAGGGUUUUAGUUGACGGAAUUGUGGCGGGAUCUACAAUUCUUCUUCUUCUUCUUCUGAAAAGAAACCCAAAGAUCCCUCCAUAAUUCCCUCCACUAAAACCCUAACUUCU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
AY080866.1	ncRNA:21   CGGUGUUAAGGCAGUUGAUUU   1   *==||||*||||||||||||| targets:437   AUUACAACUCCGUCAACUAAA   457 Target Full Sequence	2.0	Arabidopsis thaliana At2g29370 mRNA sequence	NA	coding protein	psRNATarget
NM_179801.3	ncRNA:21   CGGUGUUAAGGCAGUUGAUUU   1   *==||||*||||||||||||| targets:648   AUUACAACUCCGUCAACUAAA   668 Target Full Sequence	2.0	Arabidopsis thaliana NAD(P)-binding Rossmann-fold superfamily protein mRNA	NAD(P)-binding Rossmann-fold superfamily protein(AT2G29370)	coding protein	psRNATarget

Reference

1	PMID:24119003 "Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013).