ncRNA ID | novel_gma_miR7929 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr2:39389299-39389452 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451615 |
Length | 21 |
Mature sequence(if miRNA) | 134 - CAUGUUUGAUCUAUGGUUCAA - 154 |
Stem-loop(if miRNA) |
--    UU         AUG   G  U UUUUA    GA   UG       -----------   G      UG      GAAA   GGAU  UGGGUUAGA   AUG AA C     CGGU  CAG  AUUUAUU           UUU AAGCGA  GAUGUU    A   ||||  |||||||||   ||| || |     ||||  |||  |||||||           ||| ||||||  ||||||   CUUG  AUCUAGUUU   UAC UU G     GCUA  GUU  UAAAUGA           AAA UUUGUU  UUAUAA    U AA    GU         --G   G  U UUUUG    -A   GU       UUAUAAAAAUG   G      CA      AAGU |
Stem-loop sequence | GGAUUUUGGGUUAGAAUGAUGGAAUCUUUUACGGUGACAGUGAUUUAUUUUUGAAGCGAUGGAUGUUGAAAAUUGAAAAUAUUACUUGUUUGAAAGUAAAAAUAUUAGUAAAUUGUUGAAUCGGUUUUGUUUGCAUGUUUGAUCUAUGGUUCAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006592498.2 |
|
2.0 | PREDICTED: Glycine max uncharacterized LOC100812200 (LOC100812200), mRNA | uncharacterized LOC100812200(LOC100812200) | coding protein | psRNATarget | |||||||||
XM_003553643.3 |
|
2.5 | PREDICTED: Glycine max transcription factor MYB86-like (LOC100788976), mRNA | transcription factor MYB86-like(LOC100788976) | coding protein | psRNATarget | |||||||||
BT098578.1 |
|
3.0 | Soybean clone JCVI-FLGm-23A22 unknown mRNA | NA | coding protein | psRNATarget |