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BaseInfo

ncRNA ID novel_gma_miR7929
Species Glycine max
Class miRNA
Genome position Chr2:39389299-39389452 [+]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 21
Mature sequence(if miRNA) 134 - CAUGUUUGAUCUAUGGUUCAA - 154
Stem-loop(if miRNA) --    UU         AUG   G  U UUUUA    GA   UG       -----------   G      UG      GAAA
  GGAU  UGGGUUAGA   AUG AA C     CGGU  CAG  AUUUAUU           UUU AAGCGA  GAUGUU    A
  ||||  |||||||||   ||| || |     ||||  |||  |||||||           ||| ||||||  ||||||
  CUUG  AUCUAGUUU   UAC UU G     GCUA  GUU  UAAAUGA           AAA UUUGUU  UUAUAA    U
AA    GU         --G   G  U UUUUG    -A   GU       UUAUAAAAAUG   G      CA      AAGU
Stem-loop sequence GGAUUUUGGGUUAGAAUGAUGGAAUCUUUUACGGUGACAGUGAUUUAUUUUUGAAGCGAUGGAUGUUGAAAAUUGAAAAUAUUACUUGUUUGAAAGUAAAAAUAUUAGUAAAUUGUUGAAUCGGUUUUGUUUGCAUGUUUGAUCUAUGGUUCAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006592498.2
ncRNA:21   AACUUGGUAUCUAGUUUGUAC   1
  ***|||*||||||||||||||
targets:6991   CCUAACGAUAGAUCAAACAUG   7011

2.0 PREDICTED: Glycine max uncharacterized LOC100812200 (LOC100812200), mRNA uncharacterized LOC100812200(LOC100812200) coding protein psRNATarget
XM_003553643.3
ncRNA:21   AACUUGGUAUCUAGUUUGUAC   1
  ||||||=||=|||||||||||
targets:870   UUGAACUAUGGAUCAAACAUG   890

2.5 PREDICTED: Glycine max transcription factor MYB86-like (LOC100788976), mRNA transcription factor MYB86-like(LOC100788976) coding protein psRNATarget
BT098578.1
ncRNA:21   AACUUGGUAUCUAGUUUGUAC   1
  |****||||||||||||||||
targets:959   UCAUCCCAUAGAUCAAACAUG   979

3.0 Soybean clone JCVI-FLGm-23A22 unknown mRNA NA coding protein psRNATarget