Search result

BaseInfo

ncRNA ID novel_gma_miR7919
Species Glycine max
Class miRNA
Genome position Chr20:18635663-18635751 [-]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 24
Mature sequence(if miRNA) 1 - GAUCAACUUGAUCCGUAGAAGCCU - 24
Stem-loop(if miRNA) --AGAC                   CC   GA           A
      UUACGGAUCAAGUUGAUCC  AAG  UUUUACGAAUC A
      |||||||||||||||||||  |||  ||||||||||| G
      GAUGCCUAGUUCAACUAGG  UUC  AAAAUGCUUAG U
UCCGAA                   CA   GG           U
Stem-loop sequence AGACUUACGGAUCAAGUUGAUCCCCAAGGAUUUUACGAAUCAAGUUGAUUCGUAAAAGGCUUACGGAUCAACUUGAUCCGUAGAAGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003547498.3
ncRNA:24   UCCGAAGAUGCCUAGUUCAACUAG   1
  |**|||||=|||||||||||||||
targets:45   AUUCUUCUGCGGAUCAAGUUGAUC   68

1.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X1, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:24   UCCGAAGAUGCCUAGUUCAACUAG   1
  |**|||||=|||||||||||||||
targets:640   AUUCUUCUGCGGAUCAAGUUGAUC   663

1.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_014768353.1
ncRNA:24   UCCGAAGAUGCCUAGUUCAACUAG   1
  |*****=|||||||||||||||||
targets:588   AAAGAAUUACGGAUCAAGUUGAUC   611

2.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_006600975.2
ncRNA:24   UCCGAAGAUGCCUAGUUCAACUAG   1
  |||=|**|||||||||||||||||
targets:1181   AGGUUGAUACGGAUCAAGUUGAUC   1204

2.0 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget
XM_003524153.3
ncRNA:24   UCCGAAGAUGCCUAGUUCAACUAG   1
  *******|||||||||||||||||
targets:227   UUAAACAUACGGAUCAAGUUGAUC   250

2.0 PREDICTED: Glycine max uncharacterized LOC100805437 (LOC100805437), mRNA uncharacterized LOC100805437(LOC100805437) coding protein psRNATarget
XM_014762699.1
ncRNA:24   UCCGAAGAUGCCUAGUUCAACUAG   1
  |**||||||*||||||||*|||||
targets:179   AUACUUCUAAGGAUCAAGCUGAUC   202

2.5 PREDICTED: Glycine max tripeptidyl-peptidase 2-like (LOC102667884), mRNA tripeptidyl-peptidase 2-like(LOC102667884) coding protein psRNATarget