ncRNA ID | novel_gma_miR7886 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr19:3942173-3942379 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451615 |
Length | 24 |
Mature sequence(if miRNA) | 184 - AGGAUUAACGACAUGUAGUAAGUU - 207 |
Stem-loop(if miRNA) |
--        U    A         UUC           AACU   AAG                   U    U       -  CC               CAC   UUUACUAC UGUC UUAGUUUUC   CGUUGAGUGAU    UGA   ACGAAGUGUUACAUCAUCA GUCU AUCAUUG CA  UCAUUGUCAUAUUAU   C   |||||||| |||| |||||||||   |||||||||||    |||   ||||||||||||||||||| |||| ||||||| ||  |||||||||||||||   GAAUGAUG ACAG AAUUAGGAG   GCAAUUCACUA    ACU   UGUUUCACAGUGUAGUAGU UAGA UAGUAAC GU  AGUAACGGUGUAGUA   U UU        U    C         CAU           CUAC   GUA                   U    U       U  AC               ACU |
Stem-loop sequence | UUUACUACUUGUCAUUAGUUUUCUUCCGUUGAGUGAUAACUUGAAAGACGAAGUGUUACAUCAUCAUGUCUUAUCAUUGCACCUCAUUGUCAUAUUAUCACCUUCAAUGAUGUGGCAAUGACAUGUCAAUGAUUAGAUUUGAUGAUGUGACACUUUGUAUGUCACAUCAUCACUUAACGUACGAGGAUUAACGACAUGUAGUAAGUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003521099.3 |
|
2.5 | PREDICTED: Glycine max protein STRICTOSIDINE SYNTHASE-LIKE 2-like (LOC100789150), mRNA | protein STRICTOSIDINE SYNTHASE-LIKE 2-like(LOC100789150) | coding protein | psRNATarget |