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BaseInfo

ncRNA ID novel_gma_miR7886
Species Glycine max
Class miRNA
Genome position Chr19:3942173-3942379 [+]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 24
Mature sequence(if miRNA) 184 - AGGAUUAACGACAUGUAGUAAGUU - 207
Stem-loop(if miRNA) --        U    A         UUC           AACU   AAG                   U    U       -  CC               CAC
  UUUACUAC UGUC UUAGUUUUC   CGUUGAGUGAU    UGA   ACGAAGUGUUACAUCAUCA GUCU AUCAUUG CA  UCAUUGUCAUAUUAU   C
  |||||||| |||| |||||||||   |||||||||||    |||   ||||||||||||||||||| |||| ||||||| ||  |||||||||||||||
  GAAUGAUG ACAG AAUUAGGAG   GCAAUUCACUA    ACU   UGUUUCACAGUGUAGUAGU UAGA UAGUAAC GU  AGUAACGGUGUAGUA   U
UU        U    C         CAU           CUAC   GUA                   U    U       U  AC               ACU
Stem-loop sequence UUUACUACUUGUCAUUAGUUUUCUUCCGUUGAGUGAUAACUUGAAAGACGAAGUGUUACAUCAUCAUGUCUUAUCAUUGCACCUCAUUGUCAUAUUAUCACCUUCAAUGAUGUGGCAAUGACAUGUCAAUGAUUAGAUUUGAUGAUGUGACACUUUGUAUGUCACAUCAUCACUUAACGUACGAGGAUUAACGACAUGUAGUAAGUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003521099.3
ncRNA:24   UUGAAUGAUGUACAGCAAUUAGGA   1
  =|***|=|||||||||||=|||||
targets:791   GAGGAAUUACAUGUCGUUGAUCCU   814

2.5 PREDICTED: Glycine max protein STRICTOSIDINE SYNTHASE-LIKE 2-like (LOC100789150), mRNA protein STRICTOSIDINE SYNTHASE-LIKE 2-like(LOC100789150) coding protein psRNATarget