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BaseInfo

ncRNA ID novel_gma_miR7880
Species Glycine max
Class miRNA
Genome position Chr1:13222736-13222831 [+]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 22
Mature sequence(if miRNA) 75 - UGAGGAUAUAUAAGUAAAAUUC - 96
Stem-loop(if miRNA) --         -         -     A    AAUAC   -AU    UCUCA
  AUUUUAUUU UGUAUUUUU UAACU GUAA     UAU   UAAC     U
  ||||||||| ||||||||| ||||| ||||     |||   ||||
  UAAAAUGAA AUAUAGGAG AUUGA UAUU     AUA   AUUG     A
CU         U         U     A    -----   CAU    UACUU
Stem-loop sequence AUUUUAUUUUGUAUUUUUUAACUAGUAAAAUACUAUAUUAACUCUCAUAUUCAUGUUAUACAUAUUAUAAGUUAUGAGGAUAUAUAAGUAAAAUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK244306.1
ncRNA:22   CUUAAAAUGAAUAUAUAGGAGU   1
  **|||*||||||||||||=|||
targets:639   CCAUUAUACUUAUAUAUCUUCA   660

2.5 Glycine max cDNA, clone: GMFL01-02-K10 NA coding protein psRNATarget
XM_006577222.2
ncRNA:22   CUUAAAAUGAAUAUAUAGGAGU   1
  ||||**||*|||||||||||||
targets:4110   GAAUGGUAGUUAUAUAUCCUCA   4131

3.0 PREDICTED: Glycine max mediator of RNA polymerase II transcription subunit 14-like (LOC100797588), mRNA mediator of RNA polymerase II transcription subunit 14-like(LOC100797588) coding protein psRNATarget