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BaseInfo

ncRNA ID novel_gma_miR7872
Species Glycine max
Class miRNA
Genome position Chr18:36276169-36276377 [-]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 24
Mature sequence(if miRNA) 1 - UUAGAAUGAACAUCUGUAGGGAUC - 24
Stem-loop(if miRNA) --  G     C             A  A    AC                           A    U          UC A      C   G          GG
  UC UUACA AUGUUCAUUCUAA CC AAUU  GAUAAACUCAUCUCUUACCUCUAAGCG GCUC CGUGUGUAGU  G UAGUGA AGC GCGUCUCUAG  A
  || ||||| ||||||||||||| || ||||  ||||||||||||||||||||||||||| |||| ||||||||||  | |||||| ||| ||||||||||  A
  AG GAUGU UACAAGUAAGAUU GG UUAA  CUAUUUGAGUAGGGAAUGGAGAUUCGC CGAG GUACACAUCA  C GUUACU UCG CGCAGAGAUC  C
CU  G     C             G  G    CA                           C    U          GA C      A   A          GU
Stem-loop sequence UCGUUACACAUGUUCAUUCUAAACCAAAUUACGAUAAACUCAUCUCUUACCUCUAAGCGAGCUCUCGUGUGUAGUUCGAUAGUGACAGCGGCGUCUCUAGGGAACUGCUAGAGACGCAGCUAUCAUUGCCAGACUACACAUGUGAGCCCGCUUAGAGGUAAGGGAUGAGUUUAUCACAAUUGGGGUUAGAAUGAACAUCUGUAGGGAUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014774655.1
ncRNA:24   CUAGGGAUGUCUACAAGUAAGAUU   1
  ||||||||||*|*|||||||||||
targets:145   GAUCCCUACACACGUUCAUUCUAA   168

2.5 PREDICTED: Glycine max uncharacterized LOC100798161 (LOC100798161), transcript variant X3, mRNA uncharacterized LOC100798161(LOC100798161) coding protein psRNATarget