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BaseInfo

ncRNA ID	novel_gma_miR7871
Species	Glycine max
Class	miRNA
Genome position	Chr18:36326869-36327085 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451615
Length	22
Mature sequence(if miRNA)	1 - AAGGACAAAUAAUUAAGAAAGU - 22
Stem-loop(if miRNA)	--        C           A              C     G  A                         G   C  GUAAAA     A  U  A           G   UUUCUUAA UAUUUGUCCUU AGAUUUUACUGUUU UUUUU CU AUAUGUAAAUAUAAAUGGUAUAAGG UAU GC      ACAUG UC AU UUUACUUCUAA A   |||||||| ||||||||||| |||||||||||||| ||||| || ||||||||||||||||||||||||| ||| ||      ||||| || || ||||||||||| U   AAAGAAUU AUAAACAGGAA UCUAAAAUGAUAAA AAAAA GA UAUACAUUUAUAUUUAUUAUAUUCC AUA CG      UGUAC AG UA AAAUGGGGAUU U UG        A           G              A     -  A                         G   C  AAUACC     C  -  A           G
Stem-loop sequence	UUUCUUAACUAUUUGUCCUUAAGAUUUUACUGUUUCUUUUUGCUAAUAUGUAAAUAUAAAUGGUAUAAGGGUAUCGCGUAAAAACAUGAUCUAUAUUUACUUCUAAGAUUGUUAGGGGUAAAAAUGACCAUGUCCAUAAGCCAUAGCCUUAUAUUAUUUAUAUUUACAUAUAAGAAAAAAAAAUAGUAAAAUCUGAAGGACAAAUAAUUAAGAAAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006593804.2	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   ||||||||||*||||||||||| targets:1511   ACUUUCUUAACUAUUUGUCCUU   1532 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X1, mRNA	uncharacterized LOC100783198(LOC100783198)	coding protein	psRNATarget
XM_006593805.2	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   ||||||||||*||||||||||| targets:1487   ACUUUCUUAACUAUUUGUCCUU   1508 Target Full Sequence	1.5	PREDICTED: Glycine max uncharacterized LOC100783198 (LOC100783198), transcript variant X2, mRNA	uncharacterized LOC100783198(LOC100783198)	coding protein	psRNATarget
XM_006585823.2	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   ||||||||=|||||||||||*| targets:1314   ACUUUCUUGAUUAUUUGUCCAU   1335 Target Full Sequence	2.5	PREDICTED: Glycine max ASC1-like protein (LOC100782504), transcript variant X1, mRNA	ASC1-like protein(LOC100782504)	coding protein	psRNATarget
XM_003554179.3	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   ==||||*|||||*||||||||| targets:127   GUUUUCCUAAUUCUUUGUCCUU   148 Target Full Sequence	2.5	PREDICTED: Glycine max dirigent protein 22-like (LOC100816618), mRNA	dirigent protein 22-like(LOC100816618)	coding protein	psRNATarget
AK286510.1	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   ==||||*|||||*||||||||| targets:41   GUUUUCCUAAUUCUUUGUCCUU   62 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-30-C06	NA	coding protein	psRNATarget
AK286644.1	ncRNA:22   UGAAAGAAUUAAUAAACAGGAA   1   |*||||||*||||||||||*|| targets:996   AAUUUCUUCAUUAUUUGUCAUU   1017 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-33-G11	NA	coding protein	psRNATarget