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BaseInfo

ncRNA ID novel_gma_miR7868
Species Glycine max
Class miRNA
Genome position Chr18:7172167-7172254 [+]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 22
Mature sequence(if miRNA) 1 - UAUUUUUUAUUUAUUUUUAGCU - 22
Stem-loop(if miRNA) UAUUUUUUAUUUA     AGCUUGGGUUGGAACUGGCUCAGAGCGACCU
             UUUUU                               G
             |||||
             CCUAA                               G
------------U     AAAGUUGGGUAAGGAAAUGAACAUUCAACCU
Stem-loop sequence UAUUUUUUAUUUAUUUUUAGCUUGGGUUGGAACUGGCUCAGAGCGACCUGGUCCAACUUACAAGUAAAGGAAUGGGUUGAAAAAUCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006587020.2
ncRNA:22   UCGAUUUUUAUUUAUUUUUUAU   1
  |||*||||||||||||||||||
targets:81   AGCAAAAAAUAAAUAAAAAAUA   102

1.0 PREDICTED: Glycine max uncharacterized LOC100814604 (LOC100814604), transcript variant X2, mRNA uncharacterized LOC100814604(LOC100814604) coding protein psRNATarget
XM_003533768.3
ncRNA:22   UCGAUUUUUAUUUAUUUUUUAU   1
  |||*||||||||||||||||||
targets:81   AGCAAAAAAUAAAUAAAAAAUA   102

1.0 PREDICTED: Glycine max uncharacterized LOC100814604 (LOC100814604), transcript variant X1, mRNA uncharacterized LOC100814604(LOC100814604) coding protein psRNATarget
XM_006603572.2
ncRNA:22   UCGAUUUUUAUUUAUUUUUUAU   1
  =|**||||||||||||||||||
targets:28   GGAAAAAAAUAAAUAAAAAAUA   49

1.0 PREDICTED: Glycine max uncharacterized LOC100306066 (LOC100306066), transcript variant X1, mRNA uncharacterized LOC100306066(LOC100306066) coding protein psRNATarget
NM_001250078.2
ncRNA:22   UCGAUUUUUAUUUAUUUUUUAU   1
  =|**||||||||||||||||||
targets:28   GGAAAAAAAUAAAUAAAAAAUA   49

1.0 Glycine max uncharacterized LOC100306066 (LOC100306066), mRNA uncharacterized LOC100306066(LOC100306066) coding protein psRNATarget
XM_003546219.3
ncRNA:22   UCGAUUUUUAUUUAUUUUUUAU   1
  |***||||||||||||||||||
targets:4   AUAAAAAAAUAAAUAAAAAAUA   25

1.0 PREDICTED: Glycine max obg-like ATPase 1 (LOC100813501), mRNA obg-like ATPase 1(LOC100813501) coding protein psRNATarget
XM_003536441.3
ncRNA:22   UCGAUU-UUUAUUUAUUUUUUAU   1
  *|=|||-||||||||||||||||
targets:140   UGUUAAUAAAUAAAUAAAAAAUA   162

2.0 PREDICTED: Glycine max 3-ketoacyl-CoA synthase 11-like (LOC100801121), mRNA 3-ketoacyl-CoA synthase 11-like(LOC100801121) coding protein psRNATarget
XM_014773038.1
ncRNA:22   UCGAUUUUUAUUUAUUUUUUAU   1
  ||=|||||||||||||||=||*
targets:2001   AGUUAAAAAUAAAUAAAAGAUU   2022

2.5 PREDICTED: Glycine max aluminum-activated malate transporter 12-like (LOC100796724), transcript variant X1, mRNA aluminum-activated malate transporter 12-like(LOC100796724) coding protein psRNATarget
XM_006605774.2
ncRNA:22   UCGAUUUUUAUUUAUUUUUUAU   1
  ||=|||||||||||||||=||*
targets:3322   AGUUAAAAAUAAAUAAAAGAUU   3343

2.5 PREDICTED: Glycine max aluminum-activated malate transporter 12-like (LOC100796724), transcript variant X4, mRNA aluminum-activated malate transporter 12-like(LOC100796724) coding protein psRNATarget
XM_003555145.3
ncRNA:22   UCGAUUUUUAUUUAUUUUUUAU   1
  ||=|||||||||||||||=||*
targets:4529   AGUUAAAAAUAAAUAAAAGAUU   4550

2.5 PREDICTED: Glycine max aluminum-activated malate transporter 12-like (LOC100796724), transcript variant X3, mRNA aluminum-activated malate transporter 12-like(LOC100796724) coding protein psRNATarget
XM_006593769.2
ncRNA:22   UCGAUUUUUAUUUAUUUUUUAU   1
  =|=||||||*|||||||||||=
targets:212   GGUUAAAAAGAAAUAAAAAAUG   233

2.5 PREDICTED: Glycine max uncharacterized LOC102667661 (LOC102667661), transcript variant X2, mRNA uncharacterized LOC102667661(LOC102667661) coding protein psRNATarget
NM_001349824.1
ncRNA:22   UC-GAUUUUUAUUUAUUUUUUAU   1
  ||-|||||||||||*|||||||=
targets:557   AGACUAAAAAUAAAAAAAAAAUG   579

2.5 Glycine max MYB-like transcription factor (LOC100527129), mRNA NA coding protein psRNATarget
BT091949.1
ncRNA:22   UC-GAUUUUUAUUUAUUUUUUAU   1
  ||-|||||||||||*|||||||=
targets:558   AGACUAAAAAUAAAAAAAAAAUG   580

2.5 Soybean clone JCVI-FLGm-9O9 unknown mRNA NA coding protein psRNATarget
XM_006577870.2
ncRNA:22   UC-GAUUUUUAUUUAUUUUU-UAU   1
  ||-=||||||||||||||||-|||
targets:1807   AGAUUAAAAAUAAAUAAAAAUAUA   1830

3.0 PREDICTED: Glycine max protein kinase APK1B, chloroplastic-like (LOC100812725), transcript variant X2, mRNA protein kinase APK1B, chloroplastic-like(LOC100812725) coding protein psRNATarget
XM_003523481.3
ncRNA:22   UC-GAUUUUUAUUUAUUUUU-UAU   1
  ||-=||||||||||||||||-|||
targets:1857   AGAUUAAAAAUAAAUAAAAAUAUA   1880

3.0 PREDICTED: Glycine max protein kinase APK1B, chloroplastic-like (LOC100812725), transcript variant X1, mRNA protein kinase APK1B, chloroplastic-like(LOC100812725) coding protein psRNATarget
XM_006590703.2
ncRNA:22   UCGAUUUUUAUUUAUUU-UUUAU   1
  |*=||||||||||||||-|||||
targets:2388   AAUUAAAAAUAAAUAAAUAAAUA   2410

3.0 PREDICTED: Glycine max arabinosyltransferase XEG113-like (LOC100789338), mRNA arabinosyltransferase XEG113-like(LOC100789338) coding protein psRNATarget
XM_003552504.3
ncRNA:22   UCGAUUU-UUAUUUAUUUUUUAU   1
  **|||||-|=|||||||||||||
targets:1664   UCCUAAAUAGUAAAUAAAAAAUA   1686

3.0 PREDICTED: Glycine max crocetin glucosyltransferase, chloroplastic-like (LOC100800222), mRNA crocetin glucosyltransferase, chloroplastic-like(LOC100800222) coding protein psRNATarget
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