Search result

BaseInfo

ncRNA ID	novel_gma_miR7850
Species	Glycine max
Class	miRNA
Genome position	Chr17:17609605-17609656 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451615
Length	24
Mature sequence(if miRNA)	29 - UUUUUCAAAAACUGAUGUUAACUA - 52
Stem-loop(if miRNA)	--           C         CUA   UUUUUCAAAAA UGAUGUUAA   U   ||||||||||| |||||||||   AAAAGGUUUUU GCUACAAUU   G CC           A         AUA
Stem-loop sequence	UUUUUCAAAAACUGAUGUUAACUAUGAUAUUAACAUCGAUUUUUGGAAAACC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003543948.3	ncRNA:24   AUCAAUUGUAGUCAAAAACUUUUU   1   ||-|||=*|||||||||||||||| targets:2627   UA-UUAGGAUCAGUUUUUGAAAAA   2649 Target Full Sequence	2.0	PREDICTED: Glycine max receptor-like protein 12 (LOC100815784), mRNA	receptor-like protein 12(LOC100815784)	coding protein	psRNATarget
XM_014775413.1	ncRNA:24   AUCAAUUG-UAGUCAAAAACUUUUU   1   *||*|||=-|||||||||||||||| targets:1717   AAGGUAAUGAUCAGUUUUUGAAAAA   1741 Target Full Sequence	3.0	PREDICTED: Glycine max protein LONGIFOLIA 1-like (LOC100775311), transcript variant X3, mRNA	protein LONGIFOLIA 1-like(LOC100775311)	coding protein	psRNATarget
XM_006579432.2	ncRNA:24   AUCAAUUG-UAGUCAAAAACUUUUU   1   *||*|||=-|||||||||||||||| targets:1792   AAGGUAAUGAUCAGUUUUUGAAAAA   1816 Target Full Sequence	3.0	PREDICTED: Glycine max protein LONGIFOLIA 1-like (LOC100775311), transcript variant X2, mRNA	protein LONGIFOLIA 1-like(LOC100775311)	coding protein	psRNATarget
XM_014775414.1	ncRNA:24   AUCAAUUG-UAGUCAAAAACUUUUU   1   *||*|||=-|||||||||||||||| targets:1896   AAGGUAAUGAUCAGUUUUUGAAAAA   1920 Target Full Sequence	3.0	PREDICTED: Glycine max protein LONGIFOLIA 1-like (LOC100775311), transcript variant X4, mRNA	protein LONGIFOLIA 1-like(LOC100775311)	coding protein	psRNATarget
XM_003525394.3	ncRNA:24   AUCAAUUG-UAGUCAAAAACUUUUU   1   *||*|||=-|||||||||||||||| targets:1896   AAGGUAAUGAUCAGUUUUUGAAAAA   1920 Target Full Sequence	3.0	PREDICTED: Glycine max protein LONGIFOLIA 1-like (LOC100775311), transcript variant X1, mRNA	protein LONGIFOLIA 1-like(LOC100775311)	coding protein	psRNATarget
XM_014769348.1	ncRNA:24   AUCAAUUG-UAGUCAAAAACUUUUU   1   *||**||=-|||||||||||||||| targets:1945   AAGGCAAUGAUCAGUUUUUGAAAAA   1969 Target Full Sequence	3.0	PREDICTED: Glycine max protein LONGIFOLIA 1-like (LOC100809978), transcript variant X3, mRNA	protein LONGIFOLIA 1-like(LOC100809978)	coding protein	psRNATarget
XM_014769347.1	ncRNA:24   AUCAAUUG-UAGUCAAAAACUUUUU   1   *||**||=-|||||||||||||||| targets:1945   AAGGCAAUGAUCAGUUUUUGAAAAA   1969 Target Full Sequence	3.0	PREDICTED: Glycine max protein LONGIFOLIA 1-like (LOC100809978), transcript variant X2, mRNA	protein LONGIFOLIA 1-like(LOC100809978)	coding protein	psRNATarget
XM_006600529.2	ncRNA:24   AUCAAUUG-UAGUCAAAAACUUUUU   1   *||**||=-|||||||||||||||| targets:1944   AAGGCAAUGAUCAGUUUUUGAAAAA   1968 Target Full Sequence	3.0	PREDICTED: Glycine max protein LONGIFOLIA 1-like (LOC100809978), transcript variant X1, mRNA	protein LONGIFOLIA 1-like(LOC100809978)	coding protein	psRNATarget