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BaseInfo

ncRNA ID novel_gma_miR7847
Species Glycine max
Class miRNA
Genome position Chr17:36361103-36361205 [-]
Reference genome Glycine_max_v2.0
Source SRR1451615
Length 20
Mature sequence(if miRNA) 1 - AAUGGUGAGGAUGAAGAGUA - 20
Stem-loop(if miRNA) --    C               U   C           ----C   -    AUU
  UUCU CAUCCUUACCAUUCA UUU UUGAAAUCUAA     GUA UAAG   A
  |||| ||||||||||||||| ||| |||||||||||     ||| ||||
  GAGA GUAGGAGUGGUAAGU AAA AAUUUUAGAUU     CAU AUUC   G
AU    A               U   A           ACCAA   U    AGU
Stem-loop sequence UUCUCCAUCCUUACCAUUCAUUUUCUUGAAAUCUAACGUAUAAGAUUAGUGACUUAUUACAACCAUUAGAUUUUAAAAAAUUGAAUGGUGAGGAUGAAGAGUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006575371.2
ncRNA:20   AUGAGAAGUAGGAGUGGUAA   1
  *|*|||||||=|||||||||
targets:1014   CAAUCUUCAUUCUCACCAUU   1033

2.5 PREDICTED: Glycine max protein LURP-one-related 7-like (LOC100806967), mRNA protein LURP-one-related 7-like(LOC100806967) coding protein psRNATarget
BT095167.1
ncRNA:20   AUGAGAAGUAGGAGUGGUAA   1
  *|*||||||||=||||||||
targets:659   GAAUCUUCAUCUUCACCAUU   678

2.5 Soybean clone JCVI-FLGm-6J20 unknown mRNA NA coding protein psRNATarget
BT098990.1
ncRNA:20   AUGAGAAGUAGGAGUGGUAA   1
  *||||||||||*|||||||*
targets:444   CACUCUUCAUCAUCACCAUC   463

2.5 Soybean clone JCVI-FLGm-23D9 unknown mRNA NA coding protein psRNATarget
XM_006595767.2
ncRNA:20   AUGAGAAGUAGGAGUGGUAA   1
  **=||*||||||||||||||
targets:355   GCUUCAUCAUCCUCACCAUU   374

3.0 PREDICTED: Glycine max glucan endo-1,3-beta-glucosidase 12-like (LOC100797861), mRNA glucan endo-1,3-beta-glucosidase 12-like(LOC100797861) coding protein psRNATarget