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BaseInfo

ncRNA ID novel_gma_miR7829
Species Glycine max
Class miRNA
Genome position Chr8:28311552-28311625 [-]
Reference genome Glycine_max_v2.0
Source SRR1294474
Length 24
Mature sequence(if miRNA) 1 - ACGCCAUUUUCCGCCACCCCGCCA - 24
Stem-loop(if miRNA) --        -      GG  -  - GCUGGGUGCGCG
  GUGGGGUG CGGGAG  AU GC G            U
  |||||||| ||||||  || || |            A
  CGCCCCAC GCCUUU  CC CA G            U
AC        C      UA  G  G GAGGGCGUGGGG
Stem-loop sequence GUGGGGUGCGGGAGGGAUGCGGCUGGGUGCGCGUAUGGGGUGCGGGAGGGACGCCAUUUUCCGCCACCCCGCCA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003553109.3
ncRNA:24   ACCGCCCCACCGCCUUUUACCGCA   1
  |||*|||||||||||||||||||*
targets:260   UGGAGGGGUGGCGGAAAAUGGCGG   283

1.0 PREDICTED: Glycine max uncharacterized LOC100780228 (LOC100780228), transcript variant X4, mRNA uncharacterized LOC100780228(LOC100780228) coding protein psRNATarget
XM_006601186.2
ncRNA:24   ACCGCCCCACCGCCUUUUACCGCA   1
  |||||||||||||*|||||||||*
targets:373   UGGCGGGGUGGCGAAAAAUGGCGG   396

2.5 PREDICTED: Glycine max uncharacterized LOC102669257 (LOC102669257), mRNA uncharacterized LOC102669257(LOC102669257) coding protein psRNATarget
XM_014773987.1
ncRNA:24   ACCG----CCCCACCGCCUUUUACCGCA   1
  ||||----||*||*|||||||||||||*
targets:1801   UGGCAGAUGGCGUAGCGGAAAAUGGCGG   1828

3.0 PREDICTED: Glycine max uncharacterized LOC102660671 (LOC102660671), mRNA uncharacterized LOC102660671(LOC102660671) coding protein psRNATarget