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BaseInfo

ncRNA ID novel_gma_miR7821
Species Glycine max
Class miRNA
Genome position Chr19:7344296-7344359 [+]
Reference genome Glycine_max_v2.0
Source SRR1451614;SRR1451615;SRR1451616;SRR1451617;SRR1451618;SRR1451621
Length 21
Mature sequence(if miRNA) 44 - UUAUUCCACAGUAGAACGCCU - 64
Stem-loop(if miRNA) --           AA  CC    C    C  CU
  GCGUUCUGCUG  GA  AUAA AGUU AU  U
  |||||||||||  ||  |||| |||| ||  C
  CGCAAGAUGAC  CU  UAUU UCAA UA  A
UC           AC  --    -    C  AA
Stem-loop sequence GCGUUCUGCUGAAGACCAUAACAGUUCAUCUUCAAAAUCAACUUUAUUCCACAGUAGAACGCCU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT093977.1
ncRNA:21   UCCGCAAGAUGACACCUUAUU   1
  |||||||||||||||||||||
targets:198   AGGCGUUCUACUGUGGAAUAA   218

0.0 Soybean clone JCVI-FLGm-14K10 unknown mRNA NA coding protein psRNATarget
NM_001289236.1
ncRNA:21   UCCGCAAGAUGACACCUUAUU   1
  |||||||||||||||||||||
targets:198   AGGCGUUCUACUGUGGAAUAA   218

0.0 Glycine max uncharacterized LOC100788286 (LOC100788286), mRNA uncharacterized LOC100788286(LOC100788286) coding protein psRNATarget
XM_006603917.2
ncRNA:21   UCCGCAAGAUGACACCUUAUU   1
  |||||||||||||||||||||
targets:191   AGGCGUUCUACUGUGGAAUAA   211

0.0 PREDICTED: Glycine max uncharacterized LOC100788286 (LOC100788286), transcript variant X1, mRNA uncharacterized LOC100788286(LOC100788286) coding protein psRNATarget
NM_001250550.1
ncRNA:21   UCCGCAAGAUGACACCUUAUU   1
  ||||||||||||||||||*||
targets:56   AGGCGUUCUACUGUGGAAAAA   76

1.5 Glycine max uncharacterized LOC100305585 (LOC100305585), mRNA uncharacterized LOC100305585(LOC100305585) coding protein psRNATarget
BT089257.1
ncRNA:21   UCCGCAAGAUGACACCUUAUU   1
  ||||||||||||||||||*||
targets:56   AGGCGUUCUACUGUGGAAAAA   76

1.5 Soybean clone JCVI-FLGm-1D3 unknown mRNA NA coding protein psRNATarget