Search result

BaseInfo

ncRNA ID	novel_gma_miR7820
Species	Glycine max
Class	miRNA
Genome position	Chr10:4465181-4465311 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451614
Length	21
Mature sequence(if miRNA)	111 - UCACGUUCUUAUUGGAUUAUG - 131
Stem-loop(if miRNA)	--       C             AUUAUCACA           G    AAU    ACUCCAUAAAAG      UAAA   UCACGUU UUAUUGGAUUAUG         UGUCAUGUUCU AUUG   GUCA            AUGAAA    U   ||||||| |||||||||||||         ||||||||||| ||||   ||||            ||||||    U   AGUGCAA AAUAACCUAGUGC         GCAGUACAAGA UAAC   CAGU            UACUUU    G AC       U             ---------           G    ---    ------------      UGUU
Stem-loop sequence	UCACGUUCUUAUUGGAUUAUGAUUAUCACAUGUCAUGUUCUGAUUGAAUGUCAACUCCAUAAAAGAUGAAAUAAAUUGUUGUUUUCAUUGACCAAUGAGAACAUGACGCGUGAUCCAAUAAUAACGUGACA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_006602607.2	ncRNA:21   GUAUUAGGUUAUUCUUGCACU   1   |||*||||||||||||||||| targets:662   CAUUAUCCAAUAAGAACGUGA   682 Target Full Sequence	1.0	PREDICTED: Glycine max transcription factor TGA7-like (LOC100794752), mRNA	transcription factor TGA7-like(LOC100794752)	coding protein	psRNATarget
LQ242575.1	ncRNA:21   GUAUUAGGUUAUUCUUGCACU   1   =||*|||||||||||||*||| targets:172   UAUCAUCCAAUAAGAACAUGA   192 Target Full Sequence	2.5	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
JB170906.1	ncRNA:21   GUAUUAGGUUAUUCUUGCACU   1   =||*|||||||||||||*||| targets:172   UAUCAUCCAAUAAGAACAUGA   192 Target Full Sequence	2.5	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget
HI410445.1	ncRNA:21   GUAUUAGGUUAUUCUUGCACU   1   =||*|||||||||||||*||| targets:172   UAUCAUCCAAUAAGAACAUGA   192 Target Full Sequence	2.5	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
NM_001250109.1	ncRNA:21   GUAUUAGGUUAUUCUUGCACU   1   =*||*||||||||||||*||| targets:458   UCUAUUCCAAUAAGAACAUGA   478 Target Full Sequence	2.5	Glycine max uncharacterized LOC100500628 (LOC100500628), mRNA	uncharacterized LOC100500628(LOC100500628)	coding protein	psRNATarget
BT091569.1	ncRNA:21   GUAUUAGGUUAUUCUUGCACU   1   =*||*||||||||||||*||| targets:458   UCUAUUCCAAUAAGAACAUGA   478 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-8E18 unknown mRNA	NA	coding protein	psRNATarget