ncRNA ID | novel_gma_miR7800 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr4:10562622-10562702 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451613 |
Length | 21 |
Mature sequence(if miRNA) | 61 - UUUGGCCUCAUUUUUGUUUUU - 81 |
Stem-loop(if miRNA) |
--       UAAU    UG  UACCCU      AAA AG  AU   GAACAAA    AGGC  AG      AGGUAC   U  UU  G   |||||||    ||||  ||      ||||||   |  ||   UUUGUUU    UCCG  UU      UCCGUG   A  GA  U UU       UUAC    GU  ---UUC      --G CU  AU |
Stem-loop sequence | GAACAAAUAAUAGGCUGAGUACCCUAGGUACAAAUAGUUAUGUUAAGUCAGGUGCCUCUUUUUGGCCUCAUUUUUGUUUUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003552496.3 |
|
2.5 | PREDICTED: Glycine max ethylene-responsive transcription factor CRF5-like (LOC100796159), mRNA | ethylene-responsive transcription factor CRF5-like(LOC100796159) | coding protein | psRNATarget | |||||||||
XM_006578649.2 |
|
2.5 | PREDICTED: Glycine max bidirectional sugar transporter SWEET14-like (LOC100794434), mRNA | bidirectional sugar transporter SWEET14-like(LOC100794434) | coding protein | psRNATarget | |||||||||
XM_003528701.3 |
|
3.0 | PREDICTED: Glycine max probable inactive purple acid phosphatase 29 (LOC100783020), mRNA | probable inactive purple acid phosphatase 29(LOC100783020) | coding protein | psRNATarget |