Search result

BaseInfo

ncRNA ID novel_gma_miR7800
Species Glycine max
Class miRNA
Genome position Chr4:10562622-10562702 [+]
Reference genome Glycine_max_v2.0
Source SRR1451613
Length 21
Mature sequence(if miRNA) 61 - UUUGGCCUCAUUUUUGUUUUU - 81
Stem-loop(if miRNA) --       UAAU    UG  UACCCU      AAA AG  AU
  GAACAAA    AGGC  AG      AGGUAC   U  UU  G
  |||||||    ||||  ||      ||||||   |  ||
  UUUGUUU    UCCG  UU      UCCGUG   A  GA  U
UU       UUAC    GU  ---UUC      --G CU  AU
Stem-loop sequence GAACAAAUAAUAGGCUGAGUACCCUAGGUACAAAUAGUUAUGUUAAGUCAGGUGCCUCUUUUUGGCCUCAUUUUUGUUUUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003552496.3
ncRNA:21   UUUUUGUUUUUACUCCGGUUU   1
  |||||||||||||||||=||*
targets:1367   AAAAACAAAAAUGAGGCUAAU   1387

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor CRF5-like (LOC100796159), mRNA ethylene-responsive transcription factor CRF5-like(LOC100796159) coding protein psRNATarget
XM_006578649.2
ncRNA:21   UUUUUGUUUUUACUCCGGUUU   1
  |||||*||||||||||=||||
targets:1019   AAAAAAAAAAAUGAGGUCAAA   1039

2.5 PREDICTED: Glycine max bidirectional sugar transporter SWEET14-like (LOC100794434), mRNA bidirectional sugar transporter SWEET14-like(LOC100794434) coding protein psRNATarget
XM_003528701.3
ncRNA:21   UUUUUGU---UUUUACUCCGGUUU   1
  **|||||---||||||||||||||
targets:292   CUAAACAGAGAAAAUGAGGCCAAA   315

3.0 PREDICTED: Glycine max probable inactive purple acid phosphatase 29 (LOC100783020), mRNA probable inactive purple acid phosphatase 29(LOC100783020) coding protein psRNATarget