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BaseInfo

ncRNA ID novel_gma_miR7779
Species Glycine max
Class miRNA
Genome position Chr17:38026400-38026504 [-]
Reference genome Glycine_max_v2.0
Source SRR1451613
Length 22
Mature sequence(if miRNA) 84 - UUUGGAUACAAGGUUAGAAGCU - 105
Stem-loop(if miRNA) --    G       ----------GUU   -------     UUUCAAGAGCUUCUCUACU
  UUUG AUACAAG             AGA       AGCUC                   G
  |||| |||||||             |||       |||||
  AAAC UAUGUUC             ACU       AGAUA                   A
AC    A       AAUGUUCACGAAA   CUAGAAA     AUCUUUAUAUCUCAAAAAA
Stem-loop sequence UUUGGAUACAAGGUUAGAAGCUCUUUCAAGAGCUUCUCUACUGAAAAAAACUCUAUAUUUCUAAUAGAAAAGAUCUCAAAAGCACUUGUAACUUGUAUACAAACA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006578927.2
ncRNA:22   UC--GAAGAUUGGAACAUAGGUUU   1
  ||--||||||=|||||||||||||
targets:2212   AGUACUUCUAGCCUUGUAUCCAAA   2235

1.0 PREDICTED: Glycine max auxin response factor 17-like (LOC102662128), mRNA auxin response factor 17-like(LOC102662128) coding protein psRNATarget
XM_003519980.3
ncRNA:22   UCGAAGAUUGGAACAUAGGUUU   1
  **||||||||=|||||||||||
targets:1600   CCCUUCUAACUUUGUAUCCAAA   1621

1.5 PREDICTED: Glycine max phosphoserine aminotransferase 2, chloroplastic-like (LOC100795286), mRNA phosphoserine aminotransferase 2, chloroplastic-like(LOC100795286) coding protein psRNATarget
XM_006595861.2
ncRNA:19   AAGAUUGGAACAUAGGUUU   1
  *|||||||||*||||||||
targets:1   CUCUAACCUUAUAUCCAAA   19

2.5 PREDICTED: Glycine max omega-hydroxypalmitate O-feruloyl transferase-like (LOC100797134), mRNA omega-hydroxypalmitate O-feruloyl transferase-like(LOC100797134) coding protein psRNATarget