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BaseInfo

ncRNA ID novel_gma_miR7740
Species Glycine max
Class miRNA
Genome position Chr18:48934577-48934626 [-]
Reference genome Glycine_max_v2.0
Source SRR1451612
Length 21
Mature sequence(if miRNA) 30 - UUACCAGAGAGAUUGUGAACA - 50
Stem-loop(if miRNA) --       --A      G    CAU
  UUACCAG   GAGAUU UGAA   G
  |||||||   |||||| ||||
  AGUGGUC   UUUUAA AUUU   A
AA       AAG      A    UAC
Stem-loop sequence UUACCAGAGAGAUUGUGAACAUGACAUUUUAAAAUUUUGAACUGGUGAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003549387.3
ncRNA:21   ACAAGUGUUAGAGAGACCAUU   1
  |||||*=||||||||||||||
targets:1377   UGUUCUUAAUCUCUCUGGUAA   1397

2.0 PREDICTED: Glycine max probable LRR receptor-like serine/threonine-protein kinase At2g16250 (LOC100815313), mRNA probable LRR receptor-like serine/threonine-protein kinase At2g16250(LOC100815313) coding protein psRNATarget
XM_003553844.3
ncRNA:21   ACAAGUGUUAGAGAGACCAUU   1
  **||||=|||||||||*||||
targets:1054   AUUUCAUAAUCUCUCUAGUAA   1074

2.5 PREDICTED: Glycine max cystinosin homolog (LOC100815914), mRNA cystinosin homolog(LOC100815914) coding protein psRNATarget
XM_006583833.2
ncRNA:21   ACAAGUGUUAGAGAGACCAUU   1
  *|*|||||||||||||*||||
targets:893   CGAUCACAAUCUCUCUUGUAA   913

2.5 PREDICTED: Glycine max extensin-like (LOC100783022), mRNA extensin-like(LOC100783022) coding protein psRNATarget