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BaseInfo

ncRNA ID novel_gma_miR7738
Species Glycine max
Class miRNA
Genome position Chr18:56258980-56259065 [-]
Reference genome Glycine_max_v2.0
Source SRR1451612
Length 21
Mature sequence(if miRNA) 1 - UCAACUUGAUUCGUAAGUCUU - 21
Stem-loop(if miRNA) --                         U   GAAU        
  GACUUGCGAAUCAAGUUGAUCCGCG GUA    GUUUGGUUA
  ||||||||||||||||||||||||| |||    ||||||||U
  CUGAAUGCUUAGUUCAACUAGGCGU CAU    UAAACUAGG
UU                         U   -AGU        
Stem-loop sequence GACUUGCGAAUCAAGUUGAUCCGCGUGUAGAAUGUUUGGUUAUGGAUCAAAUUGAUACUUGCGGAUCAACUUGAUUCGUAAGUCUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768353.1
ncRNA:21   UUCUGAAUGCUUAGUUCAACU   1
  ||||*|||||=||||||||||
targets:589   AAGAAUUACGGAUCAAGUUGA   609

2.5 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget
XM_006600975.2
ncRNA:21   UUCUGAAUGCUUAGUUCAACU   1
  ****|*|||||||||||||||
targets:1154   CUUUCGUACGAAUCAAGUUGA   1174

3.0 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget