ncRNA ID | novel_gma_miR7735 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr18:35165433-35165635 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451612 |
Length | 22 |
Mature sequence(if miRNA) | 182 - AUAUUUUUGGUUGGCUGUUAGA - 203 |
Stem-loop(if miRNA) |
--UUU    UG    U   A       UUU       AAUUUC   UG   AU   A       UUU       A   U    UG   AU  GA    AUU      CGGU  GCUA AAG GUGACUU   AAGUCAU      GGU  GCU  AAG GUGACUU   AAGUCAU UUU UGGU  GCU  AA  AUGA   U      ||||  |||| ||| |||||||   |||||||      |||  |||  ||| |||||||   ||||||| ||| ||||  |||  ||  ||||   U      GUCG  UGGU UUU UACUGAA   UUCAGUG      UCG  UGG  UUU UACUGAA   UUCGGUG GAA AUCG  UGG  UU  UACU   U AGAUU    GU    U   A       CUU       AGAUUA   GU   CU   A       UUU       A   U    GU   CU  AA    GAA |
Stem-loop sequence | UUUCGGUUGGCUAUAAGAGUGACUUUUUAAGUCAUAAUUUCGGUUGGCUAUAAGAGUGACUUUUUAAGUCAUAUUUUUGGUUGGCUAUAAGAAUGAAUUUUUAAGUCAUAAUUUCGGUUGGCUAUAAGAGUGGCUUUUUAAGUCAUAUUUUCGGUUGGCUAUUAGAGUGACUUUUCAAGUCAUAUUUUUGGUUGGCUGUUAGA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006589458.2 |
|
0.0 | PREDICTED: Glycine max uncharacterized LOC100793876 (LOC100793876), mRNA | uncharacterized LOC100793876(LOC100793876) | coding protein | psRNATarget | |||||||||
XM_003518551.3 |
|
2.5 | PREDICTED: Glycine max ABC transporter B family member 4-like (LOC100800034), mRNA | ABC transporter B family member 4-like(LOC100800034) | coding protein | psRNATarget |