Search result

BaseInfo

ncRNA ID novel_gma_miR7735
Species Glycine max
Class miRNA
Genome position Chr18:35165433-35165635 [+]
Reference genome Glycine_max_v2.0
Source SRR1451612
Length 22
Mature sequence(if miRNA) 182 - AUAUUUUUGGUUGGCUGUUAGA - 203
Stem-loop(if miRNA) --UUU    UG    U   A       UUU       AAUUUC   UG   AU   A       UUU       A   U    UG   AU  GA    AUU
     CGGU  GCUA AAG GUGACUU   AAGUCAU      GGU  GCU  AAG GUGACUU   AAGUCAU UUU UGGU  GCU  AA  AUGA   U
     ||||  |||| ||| |||||||   |||||||      |||  |||  ||| |||||||   ||||||| ||| ||||  |||  ||  ||||   U
     GUCG  UGGU UUU UACUGAA   UUCAGUG      UCG  UGG  UUU UACUGAA   UUCGGUG GAA AUCG  UGG  UU  UACU   U
AGAUU    GU    U   A       CUU       AGAUUA   GU   CU   A       UUU       A   U    GU   CU  AA    GAA
Stem-loop sequence UUUCGGUUGGCUAUAAGAGUGACUUUUUAAGUCAUAAUUUCGGUUGGCUAUAAGAGUGACUUUUUAAGUCAUAUUUUUGGUUGGCUAUAAGAAUGAAUUUUUAAGUCAUAAUUUCGGUUGGCUAUAAGAGUGGCUUUUUAAGUCAUAUUUUCGGUUGGCUAUUAGAGUGACUUUUCAAGUCAUAUUUUUGGUUGGCUGUUAGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006589458.2
ncRNA:22   AGAUUGUCGGUUGGUUUUUAUA   1
  |=||||||||||||||||||||
targets:639   UUUAACAGCCAACCAAAAAUAU   660

0.0 PREDICTED: Glycine max uncharacterized LOC100793876 (LOC100793876), mRNA uncharacterized LOC100793876(LOC100793876) coding protein psRNATarget
XM_003518551.3
ncRNA:22   AGAUUGUCGGUUGGUUUUUAUA   1
  ***|||||*=||||||||||||
targets:4178   AACAACAGAUAACCAAAAAUAU   4199

2.5 PREDICTED: Glycine max ABC transporter B family member 4-like (LOC100800034), mRNA ABC transporter B family member 4-like(LOC100800034) coding protein psRNATarget