Search result

BaseInfo

ncRNA ID novel_gma_miR7720
Species Glycine max
Class miRNA
Genome position Chr16:26308875-26308970 [-]
Reference genome Glycine_max_v2.0
Source SRR1451612
Length 24
Mature sequence(if miRNA) 73 - UUAAAUGGAUUGGAUCUUAAAUCU - 96
Stem-loop(if miRNA) --                         ----------UAUCC          A
  UUAAAUGGAUUGGAUCUUAAAUCUA               AUAUAUAUAU U
  |||||||||||||||||||||||||               ||||||||||
  AAUUUACCUAACCUAGAAUUUAGGU               UAUAUAUAUA A
UG                         UUGACAAAAUUUUUU          U
Stem-loop sequence UUAAAUGGAUUGGAUCUUAAAUCUAUAUCCAUAUAUAUAUAUAUAUAUAUAUAUUUUUUUAAAACAGUUUGGAUUUAAGAUCCAAUCCAUUUAAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014762028.1
ncRNA:24   UCUAAAUUCUAGGUUAGGUAAAUU   1
  =|||||||*||||||*||||||||
targets:3812   GGAUUUAAAAUCCAAACCAUUUAA   3835

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g21300-like (LOC100806592), transcript variant X4, mRNA pentatricopeptide repeat-containing protein At4g21300-like(LOC100806592) coding protein psRNATarget
XM_014762026.1
ncRNA:24   UCUAAAUUCUAGGUUAGGUAAAUU   1
  =|||||||*||||||*||||||||
targets:4151   GGAUUUAAAAUCCAAACCAUUUAA   4174

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g21300-like (LOC100806592), transcript variant X2, mRNA pentatricopeptide repeat-containing protein At4g21300-like(LOC100806592) coding protein psRNATarget
XM_014762027.1
ncRNA:24   UCUAAAUUCUAGGUUAGGUAAAUU   1
  =|||||||*||||||*||||||||
targets:5392   GGAUUUAAAAUCCAAACCAUUUAA   5415

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g21300-like (LOC100806592), transcript variant X3, mRNA pentatricopeptide repeat-containing protein At4g21300-like(LOC100806592) coding protein psRNATarget
XM_006587056.2
ncRNA:24   UCUAAAUUCUAGGUUAGGUAAAUU   1
  =|||||||*||||||*||||||||
targets:5392   GGAUUUAAAAUCCAAACCAUUUAA   5415

2.5 PREDICTED: Glycine max pentatricopeptide repeat-containing protein At4g21300-like (LOC100806592), transcript variant X1, mRNA pentatricopeptide repeat-containing protein At4g21300-like(LOC100806592) coding protein psRNATarget