Search result

BaseInfo

ncRNA ID novel_gma_miR7712
Species Glycine max
Class miRNA
Genome position Chr1:11230090-11230312 [-]
Reference genome Glycine_max_v2.0
Source SRR1451612
Length 22
Mature sequence(if miRNA) 202 - UUUGUGUUUUCCUUCAUGUGAC - 223
Stem-loop(if miRNA) --          C        GA  C              C   A            AUAUAUUAU    -     UUACAA  CAAAGAUUUUGACGAUGAUUUCUUUCCUUUAAGUG
  UUUGUGUUUU CUUCAUGU  CA UACGUUUCAAGAUA GUU AUCACUAACUUC         ACAC CUUAA      AG                                   U
  |||||||||| ||||||||  || |||||||||||||| ||| ||||||||||||         |||| |||||      ||                                   G
  AAACACGAAA GAAGUACG  GU AUGCAGAGUUCUAU CAA UAGUGAUUGAAG         UAGA UGUGA      UU                                   U
UA          A        UC  U              A   G            ---------    C     ------  UAGUAAUUGCAUCUGAACCUAAUUUUUUACUUACU
Stem-loop sequence UUUGUGUUUUCCUUCAUGUGACACUACGUUUCAAGAUACGUUAAUCACUAACUUCAUAUAUUAUACACCUUAAUUACAAAGCAAAGAUUUUGACGAUGAUUUCUUUCCUUUAAGUGUGUUCAUUCAUUUUUUAAUCCAAGUCUACGUUAAUGAUUUAGUGUCAGAUGAAGUUAGUGAUGAACAUAUCUUGAGACGUAUUGCUGCAUGAAGAAAAGCACAAAAU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003520049.3
ncRNA:22   CAGUGUACUUCCUUUUGUGUUU   1
  |*||=||||||||||||||||*
targets:1470   GACAUAUGAAGGAAAACACAAU   1491

2.0 PREDICTED: Glycine max probable WRKY transcription factor 4 (LOC100799335), mRNA probable WRKY transcription factor 4(LOC100799335) coding protein psRNATarget
EU019557.1
ncRNA:22   CAGUGUACUUCCUUUUGUGUUU   1
  **||=||||||||||||||||*
targets:676   AACAUAUGAAGGAAAACACAAU   697

2.0 Glycine max transcription factor (WRKY9) mRNA, partial cds NA coding protein psRNATarget
XM_003517766.3
ncRNA:22   CAGUGUACUUCCUUUUGUGUUU   1
  **||=||||||||||||||||*
targets:1460   AACAUAUGAAGGAAAACACAAU   1481

2.0 PREDICTED: Glycine max probable WRKY transcription factor 4 (LOC100127369), mRNA probable WRKY transcription factor 4(LOC100127369) coding protein psRNATarget