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BaseInfo

ncRNA ID novel_gma_miR7666
Species Glycine max
Class miRNA
Genome position Chr1:48011401-48011525 [-]
Reference genome Glycine_max_v2.0
Source SRR1451612
Length 21
Mature sequence(if miRNA) 105 - CUUCCGGUAGAAUAAAUUGUU - 125
Stem-loop(if miRNA) --       UA             UA   A           A CGA    GC  C      A
  CUUCCGG  GAAUAAAUUGUUC  CCA AAGAACCUUUU C   AGAA  UA CGGAAG A
  |||||||  |||||||||||||  ||| ||||||||||| |   ||||  || |||||| G
  GAAGGCC  CUUGUUUAACAAG  GGU UUCUUGGAAGA G   UCUU  AU GCCUUC U
AA       UA             UA   C           A AUC    AA  A      U
Stem-loop sequence CUUCCGGUAGAAUAAAUUGUUCUACCAAAAGAACCUUUUACCGAAGAAGCUACCGGAAGAAGUUCUUCCGAUAAAUUCUCUAGAAGAAGGUUCUUCUGGAUGAACAAUUUGUUCAUCCGGAAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AB498937.1
ncRNA:21   UUGUUAAAUAAGAUGGCCUUC   1
  **|||||*||||||*||||||
targets:587   CUCAAUUAAUUCUAGCGGAAG   607

2.5 Glycine max GmCRY2b mRNA for cryptochrome2, complete cds NA coding protein psRNATarget
NM_001254622.1
ncRNA:21   UUGUUAAAUAAGAUGGCCUUC   1
  **|||||*||||||*||||||
targets:587   CUCAAUUAAUUCUAGCGGAAG   607

2.5 Glycine max cryptochrome-2-like (GMCRY2B), mRNA cryptochrome-2-like(GMCRY2B) coding protein psRNATarget