ncRNA ID | novel_gma_miR7644 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr13:41935017-41935148 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451612 |
Length | 22 |
Mature sequence(if miRNA) | 1 - UUGAUUGGUUGAAAUUUAUUGC - 22 |
Stem-loop(if miRNA) |
--                                  CUA   A  C       ACAUUU  UUAUUC   UUGAUUGGUUGAAAUUUAUUGCAAAUCACCAAUU   GUG GU CCACAUC      GA      U   ||||||||||||||||||||||||||||||||||   ||| || |||||||      ||   AACUAACUAACUUUAAAUAACGUUUAGUGGUUAA   CGC CA GGUGUAG      AG      C GA                                  AAC   C  A       --AUUU  UCCUCU |
Stem-loop sequence | UUGAUUGGUUGAAAUUUAUUGCAAAUCACCAAUUCUAGUGAGUCCCACAUCACAUUUGAUUAUUCUCUCUCCUGAUUUAGAUGUGGAACCCGCCAAAAUUGGUGAUUUGCAAUAAAUUUCAAUCAAUCAAAG |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003543086.3 |
|
2.5 | PREDICTED: Glycine max anthocyanidin 3-O-glucosyltransferase 7-like (LOC100807224), mRNA | anthocyanidin 3-O-glucosyltransferase 7-like(LOC100807224) | coding protein | psRNATarget | |||||||||
XM_014764483.1 |
|
2.5 | PREDICTED: Glycine max uncharacterized protein At1g01500 (LOC100784585), transcript variant X2, mRNA | uncharacterized protein At1g01500(LOC100784585) | coding protein | psRNATarget | |||||||||
XM_006592038.2 |
|
2.5 | PREDICTED: Glycine max uncharacterized protein At1g01500 (LOC100784585), transcript variant X1, mRNA | uncharacterized protein At1g01500(LOC100784585) | coding protein | psRNATarget | |||||||||
XM_014762082.1 |
|
3.0 | PREDICTED: Glycine max uncharacterized LOC100776127 (LOC100776127), mRNA | uncharacterized LOC100776127(LOC100776127) | coding protein | psRNATarget |