Search result

BaseInfo

ncRNA ID novel_gma_miR7606
Species Glycine max
Class miRNA
Genome position Chr7:40232475-40232563 [-]
Reference genome Glycine_max_v2.0
Source SRR1451612
Length 21
Mature sequence(if miRNA) 69 - UAAUUUUUUCGGUUUGUCAUA - 89
Stem-loop(if miRNA) -UA    U    -      C  -AA       -UUACAAC   UA
   AUUU UUCG GUUUGU AU   ACUAUUG        AGU  U
   |||| |||| |||||| ||   |||||||        |||  U
   UGAA AAGU UAAAUA UA   UGAUAAC        UCA  C
UCA    U    A      C  AGG       UUCAACGU   CA
Stem-loop sequence UAAUUUUUUCGGUUUGUCAUAAACUAUUGUUACAACAGUUAUUCACACUUGCAACUUCAAUAGUGGAAUCAUAAAUAUGAAUAAGUACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003524591.2
ncRNA:21   AUACUGUUUGGCUUUUUUAAU   1
  ||||=||||||||||||||||
targets:1756   UAUGGCAAACCGAAAAAAUUA   1776

1.0 PREDICTED: Glycine max 3-ketoacyl-CoA synthase 19 (LOC100791995), mRNA 3-ketoacyl-CoA synthase 19(LOC100791995) coding protein psRNATarget
XM_006589458.2
ncRNA:21   AUACUGUUUGGCUUUUUUAAU   1
  ||||=||||||||=|||||||
targets:400   UAUGGCAAACCGAGAAAAUUA   420

2.5 PREDICTED: Glycine max uncharacterized LOC100793876 (LOC100793876), mRNA uncharacterized LOC100793876(LOC100793876) coding protein psRNATarget
XM_003532096.3
ncRNA:21   AUACUGUUUGGCUUUUUUAAU   1
  *|||||||||||||||||*|=
targets:1388   AAUGACAAACCGAAAAAAGUG   1408

2.5 PREDICTED: Glycine max ethylene-responsive transcription factor 3-like (LOC100795762), mRNA ethylene-responsive transcription factor 3-like(LOC100795762) coding protein psRNATarget