Search result

BaseInfo

ncRNA ID	novel_gma_miR7596
Species	Glycine max
Class	miRNA
Genome position	Chr6:39910657-39910779 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451612
Length	22
Mature sequence(if miRNA)	102 - UUAUUGGAUGAUGACUGUCACA - 123
Stem-loop(if miRNA)	--                   A A         C A     ---     GA  AA  C    U   UUAUUGGAUGAUGACUGUC C UGUCAUGUU U AUUGA   UCAAU  CA  AA AAUG A   ||||||||||||||||||| | ||||||||| | |||||   |||||  ||  || |||| U   AAUAACCUACUACUGACAG G ACAGUACAA A UAACU   AGUUG  GU  UU UUAU U AG                   A C         A C     UUA     AG  AC  -    U
Stem-loop sequence	UUAUUGGAUGAUGACUGUCACAUGUCAUGUUCUAAUUGAUCAAUGACAAAAACAAUGUAUUUUAUUUUCAUGGAGUUGAAUUUCAAUCAAAACAUGACACGAGACAGUCAUCAUCCAAUAAGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
LQ242574.1	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   ||*|=||||=|||||||||||| targets:102   UGCGGCAGUUAUCAUCCAAUAA   123 Target Full Sequence	2.5	Sequence 8569 from Patent EP2985353	NA	coding protein	psRNATarget
HI410444.1	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   ||*|=||||=|||||||||||| targets:102   UGCGGCAGUUAUCAUCCAAUAA   123 Target Full Sequence	2.5	Sequence 8569 from Patent EP2074227	NA	coding protein	psRNATarget
JB170905.1	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   ||*|=||||=|||||||||||| targets:102   UGCGGCAGUUAUCAUCCAAUAA   123 Target Full Sequence	2.5	Sequence 8569 from Patent EP2559767	NA	coding protein	psRNATarget
LQ242575.1	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   ||*|=||||=|||||||||||| targets:163   UGCGGCAGUUAUCAUCCAAUAA   184 Target Full Sequence	2.5	Sequence 8570 from Patent EP2985353	NA	coding protein	psRNATarget
JB170906.1	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   ||*|=||||=|||||||||||| targets:163   UGCGGCAGUUAUCAUCCAAUAA   184 Target Full Sequence	2.5	Sequence 8570 from Patent EP2559767	NA	coding protein	psRNATarget
HI410445.1	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   ||*|=||||=|||||||||||| targets:163   UGCGGCAGUUAUCAUCCAAUAA   184 Target Full Sequence	2.5	Sequence 8570 from Patent EP2074227	NA	coding protein	psRNATarget
LQ242605.1	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   *||||||*|||||||=|||||| targets:186   CGUGACAAUCAUCAUUCAAUAA   207 Target Full Sequence	2.5	Sequence 8600 from Patent EP2985353	NA	coding protein	psRNATarget
JB170936.1	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   *||||||*|||||||=|||||| targets:186   CGUGACAAUCAUCAUUCAAUAA   207 Target Full Sequence	2.5	Sequence 8600 from Patent EP2559767	NA	coding protein	psRNATarget
HI410475.1	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   *||||||*|||||||=|||||| targets:186   CGUGACAAUCAUCAUUCAAUAA   207 Target Full Sequence	2.5	Sequence 8600 from Patent EP2074227	NA	coding protein	psRNATarget
XM_006573624.2	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   *||||||*|||||||=|||||| targets:1595   CGUGACAAUCAUCAUUCAAUAA   1616 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X2, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget
XM_006573623.2	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   *||||||*|||||||=|||||| targets:1607   CGUGACAAUCAUCAUUCAAUAA   1628 Target Full Sequence	2.5	PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X1, mRNA	transcription factor bHLH18-like(LOC100816551)	coding protein	psRNATarget
AK245140.1	ncRNA:22   ACACUGUCAGUAGUAGGUUAUU   1   *|||||*|||||=||||||||| targets:1595   CGUGACCGUCAUUAUCCAAUAA   1616 Target Full Sequence	2.5	Glycine max cDNA, clone: GMFL01-21-P01	NA	coding protein	psRNATarget