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BaseInfo

ncRNA ID novel_gma_miR7580
Species Glycine max
Class miRNA
Genome position Chr4:8465204-8465256 [-]
Reference genome Glycine_max_v2.0
Source SRR1451612
Length 24
Mature sequence(if miRNA) 1 - UAUGAAUCAACUUGAUCGGUAAAG - 24
Stem-loop(if miRNA) --    G               C   
  UUAC GAUUAAGUUGAUUCA AAGU
  |||| ||||||||||||||| |||C
  AAUG CUAGUUCAACUAAGU UUUU
GA    G               A   
Stem-loop sequence UUACGGAUUAAGUUGAUUCACAAGUCUUUUAUGAAUCAACUUGAUCGGUAAAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006593444.2
ncRNA:24   GAAAUGGCUAGUUCAACUAAGUAU   1
  ***|||*||||||||||||||=||
targets:3674   GCAUACGGAUCAAGUUGAUUCGUA   3697

2.5 PREDICTED: Glycine max calcium-transporting ATPase 8, plasma membrane-type-like (LOC100813841), transcript variant X11, mRNA calcium-transporting ATPase 8, plasma membrane-type-like(LOC100813841) coding protein psRNATarget
XM_006600975.2
ncRNA:24   GAA--AUGGCUAGUUCAACUAAGUAU   1
  *||--|||*||||||||||||*||||
targets:1183   GUUGAUACGGAUCAAGUUGAUCCAUA   1208

2.5 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget