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BaseInfo

ncRNA ID novel_gma_miR7536
Species Glycine max
Class miRNA
Genome position Chr20:33796462-33796597 [+]
Reference genome Glycine_max_v2.0
Source SRR1451611
Length 24
Mature sequence(if miRNA) 1 - CCCAAAAACCGUGACGUUGUGGCU - 24
Stem-loop(if miRNA) --C     A   G         G           U  U     C C       -----UA  CUUGAGGG
   CCAAA ACC UGACGUUGU GCUGAAAUCAC GU GCAGA C UUUUUUA       AC        U
   ||||| ||| ||||||||| ||||||||||| || ||||| | |||||||       ||        A
   GGUUU UGG ACUGUAACG CGACUUUAGUG CA CGUCU G AAAAGAU       CU        U
UGA     A   A         A           U  U     C U       UUUAAUA  ACUGAGAA
Stem-loop sequence CCCAAAAACCGUGACGUUGUGGCUGAAAUCACUGUUGCAGACCCUUUUUUAUAACCUUGAGGGUAUAAGAGUCAUCAUAAUUUUAGAAAAUGCUCUGCUACUGUGAUUUCAGCAGCAAUGUCAAGGUAUUUGGAGU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006581671.2
ncRNA:24   UCGGUGUUGCAGUGCCAAAAACCC   1
  =||||||||||||*||||||||||
targets:309   GGCCACAACGUCAAGGUUUUUGGG   332

1.5 PREDICTED: Glycine max protein CPR-5 (LOC100791857), transcript variant X2, mRNA protein CPR-5(LOC100791857) coding protein psRNATarget