Search result

BaseInfo

ncRNA ID novel_gma_miR7522
Species Glycine max
Class miRNA
Genome position Chr18:37829532-37829636 [+]
Reference genome Glycine_max_v2.0
Source SRR1451611
Length 21
Mature sequence(if miRNA) 1 - UUCAAUAACCGUCUUAGAAUU - 21
Stem-loop(if miRNA) --                     CGCAU     CUACAC    UUAU C      AGC
  UUCAAUAACCGUCUUAGAAUU     GUUGA      UAUA    G CAGUUU   A
  |||||||||||||||||||||     |||||      ||||    | ||||||
  AGGUUGUUGGCAGAAUCUUAG     UAACU      AUAU    C GUCAAG   C
AU                     ---AU     ------    --UU C      AUA
Stem-loop sequence UUCAAUAACCGUCUUAGAAUUCGCAUGUUGACUACACUAUAUUAUGCCAGUUUAGCACAUAGAACUGCCUUUAUAUCAAUUAGAUUCUAAGACGGUUGUUGGAUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006599236.2
ncRNA:21   UUAAGAUUCUGCCAAUAACUU   1
  *|||=||||||||||||||||
targets:480   CAUUUUAAGACGGUUAUUGAA   500

1.0 PREDICTED: Glycine max uncharacterized LOC100788736 (LOC100788736), transcript variant X1, mRNA uncharacterized LOC100788736(LOC100788736) coding protein psRNATarget
XM_003534913.2
ncRNA:21   UUAAGAUUCUGCCAAUAACUU   1
  |=|||*||||||||||||*||
targets:138   AGUUCAAAGACGGUUAUUUAA   158

2.5 PREDICTED: Glycine max uncharacterized LOC100781107 (LOC100781107), mRNA uncharacterized LOC100781107(LOC100781107) coding protein psRNATarget