Search result

BaseInfo

ncRNA ID novel_gma_miR7468
Species Glycine max
Class miRNA
Genome position Chr6:20287416-20287612 [-]
Reference genome Glycine_max_v2.0
Source SRR1451611
Length 22
Mature sequence(if miRNA) 176 - CUAAACUUUUGUUUGACUGGUC - 197
Stem-loop(if miRNA) --     C             -  C  A   A     U         ------AA       CC    -----           ---------------   -     UUUUU
  CUAAA UUUUGUUUGACUG GU AA GUC UUAAA UUUUAAAAA        UUUAGUU  UAAA     UAAAAAUUUGA               AUC CAUUA     A
  ||||| ||||||||||||| || || ||| ||||| |||||||||        |||||||  ||||     |||||||||||               ||| |||||
  GAUUU AAAACAAACUGAU CA UU CAG GAUUU AAAAUUUUU        AGAUCAG  AUUU     AUUUUUAAACU               UAG GUAAU     U
AA     A             A  -  A   G     C         ACAUUCAA       AU    AAAAA           AAAAAUCAAGAAUUU   A     UUACU
Stem-loop sequence CUAAACUUUUGUUUGACUGGUCAAAGUCAUUAAAUUUUUAAAAAAAUUUAGUUCCUAAAUAAAAAUUUGAAUCCAUUAUUUUUAUUCAUUUAAUGAGAUUUUAAGAACUAAAAAUCAAAUUUUUAAAAAAUUUAUAGACUAGAAACUUACAUUUUUAAAACUUUAGGGACAUUACAUAGUCAAACAAAAAUUUAGAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014773987.1
ncRNA:22   CUGGUCAGUUUGUUUUCAAAUC   1
  ||||||||||||||||||*|||
targets:64   GACCAGUCAAACAAAAGUGUAG   85

1.5 PREDICTED: Glycine max uncharacterized LOC102660671 (LOC102660671), mRNA uncharacterized LOC102660671(LOC102660671) coding protein psRNATarget
XM_014773987.1
ncRNA:22   CUGGUCAGUUUGUUUUCAAAUC   1
  |||||||||||||*||||||||
targets:124   GACCAGUCAAACAUAAGUUUAG   145

1.5 PREDICTED: Glycine max uncharacterized LOC102660671 (LOC102660671), mRNA uncharacterized LOC102660671(LOC102660671) coding protein psRNATarget