Search result

BaseInfo

ncRNA ID	novel_gma_miR7462
Species	Glycine max
Class	miRNA
Genome position	Chr5:22662912-22663005 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451611
Length	24
Mature sequence(if miRNA)	71 - CAACAAGGUACUAAAGGACAAUGU - 94
Stem-loop(if miRNA)	--         A  C   UU -       UUAA    C   CACACUUAU   GUUGUUUUU UA GUG  U GUUGGAC    AUCA UUA         U   ||||||||| || |||  | |||||||    |||| |||         U   UAACAGGAA AU CAU  A CAACCUG    UAGU AAU         U UG         -  -   GG A       ----    A   ACUCCUAUA
Stem-loop sequence	GUUGUUUUUAUACGUGUUUGUUGGACUUAAAUCACUUACACACUUAUUUUAUAUCCUCAUAAAUGAUGUCCAACAAGGUACUAAAGGACAAUGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_003548039.3	ncRNA:24   UGUAACAGGAAAUCAUGGAACAAC   1   ==|*|||**||||||||||||||| targets:1436   GUAAUGUGAUUUAGUACCUUGUUG   1459 Target Full Sequence	2.0	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100791196), transcript variant X2, mRNA	UPF0481 protein At3g47200-like(LOC100791196)	coding protein	psRNATarget
XM_014769193.1	ncRNA:24   UGUAACAGGAAAUCAUGGAACAAC   1   ==|*|||**||||||||||||||| targets:1437   GUAAUGUGAUUUAGUACCUUGUUG   1460 Target Full Sequence	2.0	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100791196), transcript variant X1, mRNA	UPF0481 protein At3g47200-like(LOC100791196)	coding protein	psRNATarget
XM_003548041.3	ncRNA:24   UGUAACAGGAAAUCAUGGAACAAC   1   ==|*|||**||||||||||||||| targets:1601   GUAAUGUGAUUUAGUACCUUGUUG   1624 Target Full Sequence	2.0	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100792254), transcript variant X1, mRNA	UPF0481 protein At3g47200-like(LOC100792254)	coding protein	psRNATarget
XM_006599400.2	ncRNA:24   UGUAACAGGAAAUCAUGGAACAAC   1   ==|*|||**||||||||||||||| targets:1608   GUAAUGUGAUUUAGUACCUUGUUG   1631 Target Full Sequence	2.0	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100792254), transcript variant X3, mRNA	UPF0481 protein At3g47200-like(LOC100792254)	coding protein	psRNATarget
XM_014769191.1	ncRNA:24   UGUAACAGGAAAUCAUGGAACAAC   1   ==|*|||**||||||||||||||| targets:1601   GUAAUGUGAUUUAGUACCUUGUUG   1624 Target Full Sequence	2.0	PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100792254), transcript variant X2, mRNA	UPF0481 protein At3g47200-like(LOC100792254)	coding protein	psRNATarget