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BaseInfo

ncRNA ID novel_gma_miR7446
Species Glycine max
Class miRNA
Genome position Chr19:4354759-4354846 [+]
Reference genome Glycine_max_v2.0
Source SRR1451610
Length 21
Mature sequence(if miRNA) 68 - GAGGUGAAACUCUGAUUCUGA - 88
Stem-loop(if miRNA) --AA    U                    A ---------   G    
    AAUU GAGUUUCACUUCGGUAAUUU C         GCU ACAUU
    |||| |||||||||||||||||||| |         ||| ||||U
    UUAG CUCAAAGUGGAGCUAUUAAG G         CGG UGUAA
AGUC    U                    A UAUUAUUUU   A    
Stem-loop sequence AAAAUUUGAGUUUCACUUCGGUAAUUUACGCUGACAUUUAAUGUAGGCUUUUAUUAUGAGAAUUAUCGAGGUGAAACUCUGAUUCUGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
EU019563.1
ncRNA:21   AGUCUUAGUCUCAAAGUGGAG   1
  |=|||=|=|||||||||||||
targets:998   UUAGAGUUAGAGUUUCACCUC   1018

2.0 Glycine max transcription factor (WRKY19) mRNA, partial cds NA coding protein psRNATarget
AK245549.1
ncRNA:21   AGUCUUAGUCUCAAAGUGGAG   1
  |=|||=|=|||||||||||||
targets:1864   UUAGAGUUAGAGUUUCACCUC   1884

2.0 Glycine max cDNA, clone: GMFL01-33-N21 NA coding protein psRNATarget
XM_003538275.3
ncRNA:21   AGUCUUAGUCUCAAAGUGGAG   1
  |=|||=|=|||||||||||||
targets:2021   UUAGAGUUAGAGUUUCACCUC   2041

2.0 PREDICTED: Glycine max probable WRKY transcription factor 25 (LOC100127421), mRNA probable WRKY transcription factor 25(LOC100127421) coding protein psRNATarget
XM_003546663.3
ncRNA:21   AGUCUUAGUCUCAAAGUGGAG   1
  |||||||=|||||||=|||||
targets:1296   UCAGAAUUAGAGUUUUACCUC   1316

2.5 PREDICTED: Glycine max U-box domain-containing protein 11-like (LOC100787115), mRNA U-box domain-containing protein 11-like(LOC100787115) coding protein psRNATarget
JN201532.1
ncRNA:21   AGUCUUAGUCUCAAAGUGGAG   1
  |||*|||||||||||=|||||
targets:181   UCAAAAUCAGAGUUUUACCUC   201

2.5 Glycine max clone Gm4-2 mRNA sequence NA coding protein psRNATarget
BT098239.1
ncRNA:21   AGUCUUAGUCUCAAAGUGGAG   1
  |*|||||||||||||=||||=
targets:214   UAAGAAUCAGAGUUUUACCUU   234

2.5 Soybean clone JCVI-FLGm-12O15 unknown mRNA NA coding protein psRNATarget
JN201531.1
ncRNA:21   AGUCUUAGUCUCAAAGUGGAG   1
  |*|||||||||||||=||||=
targets:232   UAAGAAUCAGAGUUUUACCUU   252

2.5 Glycine max clone Gm4-1 mRNA sequence NA coding protein psRNATarget
XM_014769364.1
ncRNA:21   AGUCUUAGUCUCAAAGUGGAG   1
  ||*||||=||||||||||||=
targets:1840   UCUGAAUUAGAGUUUCACCUU   1860

3.0 PREDICTED: Glycine max transcription repressor OFP17-like (LOC102659778), mRNA transcription repressor OFP17-like(LOC102659778) coding protein psRNATarget