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BaseInfo

ncRNA ID novel_gma_miR7404
Species Glycine max
Class miRNA
Genome position Chr16:1866852-1866909 [-]
Reference genome Glycine_max_v2.0
Source SRR1292929
Length 24
Mature sequence(if miRNA) 35 - AAUCAGAACAUGACACGUGACAAG - 58
Stem-loop(if miRNA) --                      A  GA
  AAUCAGAACAUGACACGUGACA GU  U
  |||||||||||||||||||||| ||  G
  UUAGUCUUGUACUGUGCACUGU CA  U
GG                      -  GU
Stem-loop sequence AAUCAGAACAUGACACGUGACAAGUGAUGUUGACUGUCACGUGUCAUGUUCUGAUUGG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
LQ242574.1
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  **||||||||||||||||||*|||
targets:16   ACUGUCACGUGUCAUGUUCUAAUU   39

1.5 Sequence 8569 from Patent EP2985353 NA coding protein psRNATarget
JB170905.1
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  **||||||||||||||||||*|||
targets:16   ACUGUCACGUGUCAUGUUCUAAUU   39

1.5 Sequence 8569 from Patent EP2559767 NA coding protein psRNATarget
HI410444.1
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  **||||||||||||||||||*|||
targets:16   ACUGUCACGUGUCAUGUUCUAAUU   39

1.5 Sequence 8569 from Patent EP2074227 NA coding protein psRNATarget
JB170906.1
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  **||||||||||||||||||*|||
targets:77   ACUGUCACGUGUCAUGUUCUAAUU   100

1.5 Sequence 8570 from Patent EP2559767 NA coding protein psRNATarget
LQ242575.1
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  **||||||||||||||||||*|||
targets:77   ACUGUCACGUGUCAUGUUCUAAUU   100

1.5 Sequence 8570 from Patent EP2985353 NA coding protein psRNATarget
HI410445.1
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  **||||||||||||||||||*|||
targets:77   ACUGUCACGUGUCAUGUUCUAAUU   100

1.5 Sequence 8570 from Patent EP2074227 NA coding protein psRNATarget
XM_003518407.3
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  **||||||||||||*|||||||||
targets:1635   ACUGUCACGUGUCACGUUCUGAUU   1658

1.5 PREDICTED: Glycine max UPF0481 protein At3g47200-like (LOC100803577), mRNA UPF0481 protein At3g47200-like(LOC100803577) coding protein psRNATarget
JB170936.1
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  |||-||||||||||||||=||||*
targets:107   CUU-UCACGUGUCAUGUUUUGAUG   129

2.5 Sequence 8600 from Patent EP2559767 NA coding protein psRNATarget
LQ242605.1
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  |||-||||||||||||||=||||*
targets:107   CUU-UCACGUGUCAUGUUUUGAUG   129

2.5 Sequence 8600 from Patent EP2985353 NA coding protein psRNATarget
HI410475.1
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  |||-||||||||||||||=||||*
targets:107   CUU-UCACGUGUCAUGUUUUGAUG   129

2.5 Sequence 8600 from Patent EP2074227 NA coding protein psRNATarget
XM_006573624.2
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  |||-||||||||||||||=||||*
targets:1516   CUU-UCACGUGUCAUGUUUUGAUG   1538

2.5 PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X2, mRNA transcription factor bHLH18-like(LOC100816551) coding protein psRNATarget
XM_006573623.2
ncRNA:24   GAACAGUGCACAGUACAAGACUAA   1
  |||-||||||||||||||=||||*
targets:1528   CUU-UCACGUGUCAUGUUUUGAUG   1550

2.5 PREDICTED: Glycine max transcription factor bHLH18-like (LOC100816551), transcript variant X1, mRNA transcription factor bHLH18-like(LOC100816551) coding protein psRNATarget