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BaseInfo

ncRNA ID novel_gma_miR7380
Species Glycine max
Class miRNA
Genome position Chr8:4939928-4940062 [+]
Reference genome Glycine_max_v2.0
Source SRR1451610
Length 24
Mature sequence(if miRNA) 112 - AAGUUGAUCCGUAAGCCUUUUAUG - 135
Stem-loop(if miRNA) --     UU      A     G   AUC     AA  C           G                U
  UAAAA  CUUACG AUCAA UUG   CGUAA  UU UUACGGAUCAA UUGAUCCGUAUGUUGA A
  |||||  |||||| ||||| |||   |||||  || ||||||||||| |||||||||||||||| U
  AUUUU  GAAUGC UAGUU AAC   GUAUU  AA AAUGUUUAGUU AACUAGGCAUACGAUU U
GU     CC      C     G   CAA     AG  A           G                U
Stem-loop sequence UAAAAUUCUUACGAAUCAAGUUGAUCCGUAAAAUUCUUACGGAUCAAGUUGAUCCGUAUGUUGAUAUUUUUAGCAUACGGAUCAAGUUGAUUUGUAAAAAGAUUAUGAACCAAGUUGAUCCGUAAGCCUUUUAUG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006600975.2
ncRNA:24   GUAUUUUCCGAAUGCCUAGUUGAA   1
  |=||||||*|||||||||||||||
targets:1241   CGUAAAAGCCUUACGGAUCAACUU   1264

1.0 PREDICTED: Glycine max basic leucine zipper 9-like (LOC100776831), mRNA basic leucine zipper 9-like(LOC100776831) coding protein psRNATarget
XM_014768353.1
ncRNA:24   GUAUUUUCCGAAUGCCUAGUUGAA   1
  |=|||||**=||||||||||||||
targets:501   CGUAAAAUCUUUACGGAUCAACUU   524

3.0 PREDICTED: Glycine max CBL-interacting serine/threonine-protein kinase 1-like (LOC100780524), transcript variant X2, mRNA CBL-interacting serine/threonine-protein kinase 1-like(LOC100780524) coding protein psRNATarget