Search result

BaseInfo

ncRNA ID	novel_gma_miR7327
Species	Glycine max
Class	miRNA
Genome position	Chr18:41421882-41422070 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451609
Length	22
Mature sequence(if miRNA)	168 - AAGGUGAUCCACAAUUGAUAGU - 189
Stem-loop(if miRNA)	--                                UACUCUGCUGCCCUCCAACCUCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN   UAUCAAUUGUGGAUCACCUUGGCUUUAGGAGA                                                            N   ||||||||||||||||||||||||||||||||                                                            N   AUAGUUAACACCUAGUGGAACCGAAAUCCUCU                                                            N UG                                NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
Stem-loop sequence	UAUCAAUUGUGGAUCACCUUGGCUUUAGGAGAUACUCUGCUGCCCUCCAACCUCGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNUCUCCUAAAGCCAAGGUGAUCCACAAUUGAUAGU

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014777078.1	ncRNA:22   UGAUAGUUAACACCUAGUGGAA   1   ||||||||||||*||||||||| targets:507   ACUAUCAAUUGUUGAUCACCUU   528 Target Full Sequence	1.5	PREDICTED: Glycine max zinc finger BED domain-containing protein RICESLEEPER 1-like (LOC106799108), mRNA	zinc finger BED domain-containing protein RICESLEEPER 1-like(LOC106799108)	coding protein	psRNATarget
XM_014763612.1	ncRNA:22   UGAUAGUUAACACCUAGUGGAA   1   ||||||||||||*||||||||| targets:126   ACUAUCAAUUGUUGAUCACCUU   147 Target Full Sequence	1.5	PREDICTED: Glycine max zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC106795077), mRNA	zinc finger BED domain-containing protein RICESLEEPER 2-like(LOC106795077)	coding protein	psRNATarget
XM_014769930.1	ncRNA:22   UGAUAGUUAACACCUAGUGGAA   1   ||||||||||||*||||||||| targets:706   ACUAUCAAUUGUUGAUCACCUU   727 Target Full Sequence	1.5	PREDICTED: Glycine max zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC106796771), mRNA	zinc finger BED domain-containing protein RICESLEEPER 2-like(LOC106796771)	coding protein	psRNATarget
XM_014778252.1	ncRNA:22   UGAUAGUUAACACCUAGUGGAA   1   ||||||||||||*||||||||| targets:989   ACUAUCAAUUGUUGAUCACCUU   1010 Target Full Sequence	1.5	PREDICTED: Glycine max zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC100796027), transcript variant X1, mRNA	zinc finger BED domain-containing protein RICESLEEPER 2-like(LOC100796027)	coding protein	psRNATarget
XM_014778253.1	ncRNA:22   UGAUAGUUAACACCUAGUGGAA   1   ||||||||||||*||||||||| targets:1025   ACUAUCAAUUGUUGAUCACCUU   1046 Target Full Sequence	1.5	PREDICTED: Glycine max zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC100796027), transcript variant X2, mRNA	zinc finger BED domain-containing protein RICESLEEPER 2-like(LOC100796027)	coding protein	psRNATarget
XM_014778496.1	ncRNA:22   UGAUAGUUAACACCUAGUGGAA   1   ||||||||||*||||||||||* targets:507   ACUAUCAAUUAUGGAUCACCUA   528 Target Full Sequence	2.5	PREDICTED: Glycine max zinc finger BED domain-containing protein RICESLEEPER 2-like (LOC106799595), mRNA	zinc finger BED domain-containing protein RICESLEEPER 2-like(LOC106799595)	coding protein	psRNATarget
XM_006576888.2	ncRNA:22   UGAUAGUUAACACCUAGUGGAA   1   *|*=||||||*||||||||||| targets:1243   UCCGUCAAUUUUGGAUCACCUU   1264 Target Full Sequence	2.5	PREDICTED: Glycine max tetratricopeptide repeat protein 7A-like (LOC100784353), transcript variant X4, mRNA	tetratricopeptide repeat protein 7A-like(LOC100784353)	coding protein	psRNATarget
XM_003520559.3	ncRNA:22   UGAUAGUUAACACCUAGUGGAA   1   *|*=||||||*||||||||||| targets:1240   UCCGUCAAUUUUGGAUCACCUU   1261 Target Full Sequence	2.5	PREDICTED: Glycine max tetratricopeptide repeat protein 7A-like (LOC100784353), transcript variant X1, mRNA	tetratricopeptide repeat protein 7A-like(LOC100784353)	coding protein	psRNATarget
XM_014773833.1	ncRNA:22   UGAUAGUUAACACCUAGUGGAA   1   *|*=||||||*||||||||||| targets:1671   UCCGUCAAUUUUGGAUCACCUU   1692 Target Full Sequence	2.5	PREDICTED: Glycine max tetratricopeptide repeat protein 7A-like (LOC100784353), transcript variant X2, mRNA	tetratricopeptide repeat protein 7A-like(LOC100784353)	coding protein	psRNATarget