Search result

BaseInfo

ncRNA ID	novel_gma_miR7326
Species	Glycine max
Class	miRNA
Genome position	Chr17:33780636-33780714 [+]
Reference genome	Glycine_max_v2.0
Source	SRR1451609
Length	22
Mature sequence(if miRNA)	58 - UUUUUUAAAUUUUGUGUUUGGA - 79
Stem-loop(if miRNA)	--U     AG           -UUCU           AUA    GGACG  GGAAUUUAAAA     AAGAAUUUCAA   C    |||||  |||||||||||     |||||||||||   U    UUUGU  UUUUAAAUUUU     UUCUUAAAGUU   U AGG     -G           UUUUU           AAC
Stem-loop sequence	UGGACGAGGGAAUUUAAAAUUCUAAGAAUUUCAAAUACUUCAAUUGAAAUUCUUUUUUUUUUUAAAUUUUGUGUUUGGA

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
BT093836.1	ncRNA:22   AGGUUUGUGUUUUAAAUUUUUU   1   *=|||*|||||||||||||||| targets:99   GUCAAUCACAAAAUUUAAAAAA   120 Target Full Sequence	1.0	Soybean clone JCVI-FLGm-24O12 unknown mRNA	NA	coding protein	psRNATarget
XM_003526168.3	ncRNA:22   AGGUUUGUGUUUUAAAUUUUUU   1   *=|||*|||||||||||||||| targets:1276   GUCAAUCACAAAAUUUAAAAAA   1297 Target Full Sequence	1.0	PREDICTED: Glycine max two-component response regulator ARR12 (LOC100809002), mRNA	two-component response regulator ARR12(LOC100809002)	coding protein	psRNATarget
XM_003529247.3	ncRNA:22   AGGUUUGUGUUUUAAAUUUUUU   1   ||=||=|*|||||||||||||| targets:5   UCUAAGCUCAAAAUUUAAAAAA   26 Target Full Sequence	2.0	PREDICTED: Glycine max telomerase Cajal body protein 1 (LOC100810983), mRNA	telomerase Cajal body protein 1(LOC100810983)	coding protein	psRNATarget
XM_003535716.3	ncRNA:19   UUUGUGUUUUAAAUUUUUU   1   ||==||||||||||||||| targets:1   AAGUACAAAAUUUAAAAAA   19 Target Full Sequence	2.0	PREDICTED: Glycine max WAT1-related protein At3g30340-like (LOC100806247), mRNA	WAT1-related protein At3g30340-like(LOC100806247)	coding protein	psRNATarget
XM_003521741.3	ncRNA:22   AGGUUUGUGUUUUAAAUUUUUU   1   *||||||||||||*|||||||= targets:1003   CCCAAACACAAAAAUUAAAAAG   1024 Target Full Sequence	2.5	PREDICTED: Glycine max putative F-box protein PP2-B12 (LOC100816609), mRNA	putative F-box protein PP2-B12(LOC100816609)	coding protein	psRNATarget
XM_014772368.1	ncRNA:22   AGGUUUGUGUUUUAAAUUUUUU   1   *=||||=|||||||||*||||| targets:792   AUCAAAUACAAAAUUUUAAAAA   813 Target Full Sequence	2.5	PREDICTED: Glycine max histone-lysine N-methyltransferase SUVR4-like (LOC100819479), mRNA	histone-lysine N-methyltransferase SUVR4-like(LOC100819479)	coding protein	psRNATarget
XM_003541675.3	ncRNA:22   AGGUUUGUGUUUUAAAUUUUUU   1   ***||||||||||||||=|||* targets:12   AAAAAACACAAAAUUUAGAAAC   33 Target Full Sequence	2.5	PREDICTED: Glycine max uncharacterized LOC100777465 (LOC100777465), transcript variant X1, mRNA	uncharacterized LOC100777465(LOC100777465)	coding protein	psRNATarget
BT095201.1	ncRNA:22   AG-GUUUGUGUUUUAAAUUUUUU   1   ||-||||||*|||*||||||||| targets:330   UCUCAAACAAAAAUUUUAAAAAA   352 Target Full Sequence	2.5	Soybean clone JCVI-FLGm-25G1 unknown mRNA	NA	coding protein	psRNATarget
XM_003548239.3	ncRNA:22   AGGUUUGUGUUUUAAAUUUUUU   1   ||||*|=*|||||||||||||| targets:43   UCCACAUCCAAAAUUUAAAAAA   64 Target Full Sequence	3.0	PREDICTED: Glycine max kunitz-type elastase inhibitor BrEI-like (LOC100811209), mRNA	kunitz-type elastase inhibitor BrEI-like(LOC100811209)	coding protein	psRNATarget