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BaseInfo

ncRNA ID novel_gma_miR7287
Species Glycine max
Class miRNA
Genome position Chr12:24390347-24390497 [+]
Reference genome Glycine_max_v2.0
Source SRR1451609
Length 19
Mature sequence(if miRNA) 133 - UUGGCAUGCCCAAUUUGAC - 151
Stem-loop(if miRNA) -CA        A   AA  U      -----------AG   -----U GAAACUUAUCAUCUUUGAGAAAAUGAUUGAGAGA
   AGGUUGGG GUG  GA GCCUUU             GAU      G                                  C
   |||||||| |||  || ||||||             |||      |                                  U
   UUUAACCC UAC  UU CGGAAA             CUC      U                                  U
CAG        G   GG  -      AUACAUCUUUUUU   GACUUU UAAUUCUCUUUUCUUUUCCAAUCAAUAACUGAUA
Stem-loop sequence CAAGGUUGGGAGUGAAGAUGCCUUUAGGAUUGGAAACUUAUCAUCUUUGAGAAAAUGAUUGAGAGACUUAUAGUCAAUAACUAACCUUUUCUUUUCUCUUAAUUUUUCAGCUCUUUUUUCUACAUAAAAGGCUUGGCAUGCCCAAUUUGAC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003538376.3
ncRNA:19   CAGUUUAACCCGUACGGUU   1
  ||*=||||||||||||||*
targets:269   GUGGAAUUGGGCAUGCCAU   287

3.0 PREDICTED: Glycine max tropinone reductase homolog At5g06060-like (LOC100775806), mRNA tropinone reductase homolog At5g06060-like(LOC100775806) coding protein psRNATarget
AK243820.1
ncRNA:19   CAGUUUAACCCGUACGGUU   1
  ||*=||||||||||||||*
targets:137   GUGGAAUUGGGCAUGCCAU   155

3.0 Glycine max cDNA, clone: GMFL01-01-F13 NA coding protein psRNATarget