ncRNA ID | novel_gma_miR7287 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr12:24390347-24390497 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451609 |
Length | 19 |
Mature sequence(if miRNA) | 133 - UUGGCAUGCCCAAUUUGAC - 151 |
Stem-loop(if miRNA) |
-CA        A   AA  U      -----------AG   -----U GAAACUUAUCAUCUUUGAGAAAAUGAUUGAGAGA    AGGUUGGG GUG  GA GCCUUU             GAU      G                                  C    |||||||| |||  || ||||||             |||      |                                  U    UUUAACCC UAC  UU CGGAAA             CUC      U                                  U CAG        G   GG  -      AUACAUCUUUUUU   GACUUU UAAUUCUCUUUUCUUUUCCAAUCAAUAACUGAUA |
Stem-loop sequence | CAAGGUUGGGAGUGAAGAUGCCUUUAGGAUUGGAAACUUAUCAUCUUUGAGAAAAUGAUUGAGAGACUUAUAGUCAAUAACUAACCUUUUCUUUUCUCUUAAUUUUUCAGCUCUUUUUUCUACAUAAAAGGCUUGGCAUGCCCAAUUUGAC |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_003538376.3 |
|
3.0 | PREDICTED: Glycine max tropinone reductase homolog At5g06060-like (LOC100775806), mRNA | tropinone reductase homolog At5g06060-like(LOC100775806) | coding protein | psRNATarget | |||||||||
AK243820.1 |
|
3.0 | Glycine max cDNA, clone: GMFL01-01-F13 | NA | coding protein | psRNATarget |