Search result

BaseInfo

ncRNA ID novel_gma_miR7271
Species Glycine max
Class miRNA
Genome position Chr1:50507210-50507432 [-]
Reference genome Glycine_max_v2.0
Source SRR1451609
Length 24
Mature sequence(if miRNA) 1 - AUUAAAAUAUAAAAUAUAUGGACU - 24
Stem-loop(if miRNA) --        A              A         -       CAA       --AA    --     C     A           ---    CAACUAUUUACAAAUUAUCUUGU
  UUCAUAUA UUUGUAUUUUAAUU CCUUUUAGU CUUACUA   AAAAUAU    AAUA  AUUAG UACAA UUAGUUAUAAA   UCAU                       G
  |||||||| |||||||||||||| ||||||||| |||||||   |||||||    ||||  ||||| ||||| |||||||||||   ||||                       A
  AGGUAUAU AAAUAUAAAAUUAA GGAAAAUCA GAAUGGU   UUUUAUA    UUAU  UAGUU AUGUU AAUUAAUGUUU   AUAA                       U
UC        A              A         A       -AG       CUCA    AA     A     -           UUU    UUGUUUAUUAAGUAUUGAUUAAA
Stem-loop sequence UUCAUAUAAUUUGUAUUUUAAUUACCUUUUAGUCUUACUACAAAAAAUAUAAAAUAAUUAGCUACAAAUUAGUUAUAAAUCAUCAACUAUUUACAAAUUAUCUUGUGAUAAAUUAGUUAUGAAUUAUUUGUUAAUAUUUUUUGUAAUUAAUUGUAAUUGAUAAUAUUACUCAUAUUUUGAUGGUAAGAACUAAAAGGAAAUUAAAAUAUAAAAUAUAUGGACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003517490.3
ncRNA:24   UCAGGUAUAUAAAAUAUAAAAUUA   1
  **||=|||||||||||||||||*|
targets:800   UUUCUAUAUAUUUUAUAUUUUAUU   823

1.5 PREDICTED: Glycine max uncharacterized LOC100787501 (LOC100787501), mRNA uncharacterized LOC100787501(LOC100787501) coding protein psRNATarget
XM_003532706.3
ncRNA:24   UCAGGUAUAUAAAAUAUAAAAUUA   1
  *|||||||||*||||||||*||||
targets:1029   UGUCCAUAUAGUUUAUAUUAUAAU   1052

2.5 PREDICTED: Glycine max uncharacterized LOC100785552 (LOC100785552), mRNA uncharacterized LOC100785552(LOC100785552) coding protein psRNATarget
XM_014778523.1
ncRNA:24   UCAG---GUAUAUAAAAUAUAAAAUUA   1
  |||=---|*||||||||=|||||||||
targets:17   AGUUUUUCUUAUAUUUUGUAUUUUAAU   43

2.5 PREDICTED: Glycine max uncharacterized LOC102666527 (LOC102666527), mRNA uncharacterized LOC102666527(LOC102666527) coding protein psRNATarget
XM_003543229.3
ncRNA:24   UCAGGUAUAUAAAAUAUAAAAUUA   1
  *|||=|||||*||||*||||||||
targets:949   UGUCUAUAUAAUUUACAUUUUAAU   972

2.5 PREDICTED: Glycine max protein sym-1-like (LOC100796063), mRNA protein sym-1-like(LOC100796063) coding protein psRNATarget
BT095502.1
ncRNA:24   UCAGGUAUAUAAAAUAUAAAAUUA   1
  **||=|*||||||||*||||||||
targets:1166   UAUCUAAAUAUUUUAAAUUUUAAU   1189

2.5 Soybean clone JCVI-FLGm-19O14 unknown mRNA NA coding protein psRNATarget
XM_006588424.2
ncRNA:24   UCAGGUAUAUAAAAUAUAAAAUUA   1
  **||=|*||||||||*||||||||
targets:1034   UAUCUAAAUAUUUUAAAUUUUAAU   1057

2.5 PREDICTED: Glycine max fructose-1,6-bisphosphatase, cytosolic-like (LOC100812684), transcript variant X1, mRNA fructose-1,6-bisphosphatase, cytosolic-like(LOC100812684) coding protein psRNATarget
XM_014762574.1
ncRNA:24   UCAGGUAUAUAAAAUAUAAAAUUA   1
  **||=|*||||||||*||||||||
targets:1028   UAUCUAAAUAUUUUAAAUUUUAAU   1051

2.5 PREDICTED: Glycine max fructose-1,6-bisphosphatase, cytosolic-like (LOC100812684), transcript variant X2, mRNA fructose-1,6-bisphosphatase, cytosolic-like(LOC100812684) coding protein psRNATarget
XM_014761887.1
ncRNA:24   UCAGGUAUAUAAAAU-AUAAAAUUA   1
  ***==||||||||||-|||||||||
targets:1896   CACUUAUAUAUUUUAAUAUUUUAAU   1920

3.0 PREDICTED: Glycine max E3 ubiquitin-protein ligase UPL6-like (LOC102670450), transcript variant X1, mRNA E3 ubiquitin-protein ligase UPL6-like(LOC102670450) coding protein psRNATarget