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BaseInfo

ncRNA ID ath-miR169i
Species Arabidopsis thaliana
Class miRNA
Genome position chr3:9871960-9872165 [-]
Reference genome TAIR10
Source miRBase
Length 21
Mature sequence(if miRNA) 147 - UAGCCAAGGAUGACUUGCCUG - 167
Stem-loop(if miRNA)      -A      AA       -U       U     UU  -          U    U      -C     -----GU        -UU     UCUUGUUUGAAGUC
GAAGG  GAUGUC  AGAUGAA  AGAAGAA CAUAU  GG UAGCCAAGGA GACU GCCUGA  UCUUU       GUAAAAUG   UAGUG              A
|||||  ||||||  |||||||  ||||||| |||||  || |||||||||| |||| ||||||  |||||       ||||||||   |||||              C
CUUCC  UUACAG  UCUACUU  UCUUCUU GUAUA  CC AUCGGUUCCU CUGA CGGACU  AGAAA       CGUUUUAC   UAACG              U
     AC      AC       UC       -     UU  U          -    -      AU     AAAUAUU        CAG     AACUAUGUUGAAUA
Stem-loop sequence GAAGGAGAUGUCAAAGAUGAAUAGAAGAAUCAUAUUUGGUAGCCAAGGAUGACUUGCCUGACUCUUUGUGUAAAAUGUUUAGUGUCUUGUUUGAAGUCACUAUAAGUUGUAUCAAGCAAUGACCAUUUUGCUUAUAAAAAAGAUAUCAGGCAGUCUCCUUGGCUAUCCUUAUAUGUUCUUCUCUUUCAUCUCAGACAUUCACCUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
NM_001338098.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*||||||||||||||||
targets:1271   AAGGGAAGUCAUCCUUGGCUA   1291

1.0 Arabidopsis thaliana nuclear factor Y, subunit A6 (NF-YA6), mRNA nuclear factor Y, subunit A6(NF-YA6) coding protein psRNATarget
NM_112256.3
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*||||||||||||||||
targets:1624   AAGGGAAGUCAUCCUUGGCUA   1644

1.0 Arabidopsis thaliana nuclear factor Y, subunit A6 (NF-YA6), mRNA nuclear factor Y, subunit A6(NF-YA6) coding protein psRNATarget
AY140028.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1258   AGGGGAAGUCAUCCUUGGCUA   1278

1.0 Arabidopsis thaliana CCAAT-binding factor B subunit-like protein, putative (At1g72830) mRNA, complete cds NA coding protein psRNATarget
Y13722.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1319   AGGGGAAGUCAUCCUUGGCUA   1339

1.0 Arabidopsis thaliana mRNA for Hap2c transcription factor NA coding protein psRNATarget
NM_001334553.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1368   AGGGGAAGUCAUCCUUGGCUA   1388

1.0 Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA nuclear factor Y, subunit A3(NF-YA3) coding protein psRNATarget
AY057539.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1487   AGGGGAAGUCAUCCUUGGCUA   1507

1.0 Arabidopsis thaliana At1g72830/F3N23_3 mRNA, complete cds NA coding protein psRNATarget
NM_001036195.5
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1413   AGGGGAAGUCAUCCUUGGCUA   1433

1.0 Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA nuclear factor Y, subunit A3(NF-YA3) coding protein psRNATarget
NM_105941.8
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *=||*||||||||||||||||
targets:1741   AGGGGAAGUCAUCCUUGGCUA   1761

1.0 Arabidopsis thaliana nuclear factor Y, subunit A3 (NF-YA3), mRNA nuclear factor Y, subunit A3(NF-YA3) coding protein psRNATarget
BX813919.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1199   AAGGGAAGUCAUCCUUGGCUG   1219

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTFB47ZG01 of Flowers and buds of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
AY088950.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1232   AAGGGAAGUCAUCCUUGGCUG   1252

2.0 Arabidopsis thaliana clone 106674 mRNA, complete sequence NA coding protein psRNATarget
NM_202121.2
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1305   AAGGGAAGUCAUCCUUGGCUG   1325

2.0 Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA nuclear factor Y, subunit A8(NF-YA8) coding protein psRNATarget
NM_101621.3
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1319   AAGGGAAGUCAUCCUUGGCUG   1339

2.0 Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA nuclear factor Y, subunit A8(NF-YA8) coding protein psRNATarget
NM_001198095.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1505   AAGGGAAGUCAUCCUUGGCUG   1525

2.0 Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA nuclear factor Y, subunit A8(NF-YA8) coding protein psRNATarget
BX815988.1
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1623   AAGGGAAGUCAUCCUUGGCUG   1643

2.0 Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH20ZH03 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) NA coding protein psRNATarget
NM_202122.2
ncRNA:21   GUCCGUUCAGUAGGAACCGAU   1
  *|||*|||||||||||||||=
targets:1661   AAGGGAAGUCAUCCUUGGCUG   1681

2.0 Arabidopsis thaliana nuclear factor Y, subunit A8 (NF-YA8), mRNA nuclear factor Y, subunit A8(NF-YA8) coding protein psRNATarget

Reference

1 PMID:15200956
"Computational identification of plant microRNAs and their targets, including a stress-induced miRNA";
Jones-Rhoades MW, Bartel DP;
Mol Cell. 14:787-799(2004).
2 PMID:16040653
"Expression of Arabidopsis MIRNA genes";
Xie Z, Allen E, Fahlgren N, Calamar A, Givan SA, Carrington JC;
Plant Physiol. 138:2145-2154(2005).
3 PMID:16954541
"MicroRNAs and other small RNAs enriched in the Arabidopsis RNA-dependent RNA polymerase-2 mutant";
Lu C, Kulkarni K, Souret FF, MuthuValliappan R, Tej SS, Poethig RS, Henderson IR, Jacobsen SE, Wang W, Green PJ, Meyers BC;
Genome Res. 16:1276-1288(2006).
4 PMID:17182867
"A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana";
Rajagopalan R, Vaucheret H, Trejo J, Bartel DP;
Genes Dev. 20:3407-3425(2006).
5 PMID:19815687
"Hypoxia-responsive microRNAs and trans-acting small interfering RNAs in Arabidopsis";
Moldovan D, Spriggs A, Yang J, Pogson BJ, Dennis ES, Wilson IW;
J Exp Bot. 61:165-177(2010).
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