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BaseInfo

ncRNA ID	novel_gma_miR7233
Species	Glycine max
Class	miRNA
Genome position	Chr4:23544182-23544259 [-]
Reference genome	Glycine_max_v2.0
Source	SRR1451609
Length	20
Mature sequence(if miRNA)	1 - CACGUCUUCGUCCAUGGCUC - 20
Stem-loop(if miRNA)	--C         UC       ACUAACUGCUA  A     C    CCAUGGACG  AGGAUGU           CC UUGGA C    |||||||||  |||||||           || ||||| G    GGUACCUGC  UUCUGCA           GG AACCU G CUC         --       --CACUCUCCA  -     C
Stem-loop sequence	CCCAUGGACGUCAGGAUGUACUAACUGCUACCAUUGGACCGGCUCCAAGGACCUCUCACACGUCUUCGUCCAUGGCUC

Targets Info

Target Acc	Alignment	Exception	Target Description	Target Gene Name	Target Type	Method
XM_014762077.1	ncRNA:20   CUCGGUACCUGCUUCUGCAC   1   |||||||||||||||||||| targets:568   GAGCCAUGGACGAAGACGUG   587 Target Full Sequence	0.0	PREDICTED: Glycine max THP3 homolog C2A9.11c-like (LOC102668875), transcript variant X1, mRNA	THP3 homolog C2A9.11c-like(LOC102668875)	coding protein	psRNATarget
XM_014776478.1	ncRNA:20   CUCG-GUACCUGCUUCUGCAC   1   |||=-|||||||||||||||| targets:148   GAGUUCAUGGACGAAGACGUG   168 Target Full Sequence	3.0	PREDICTED: Glycine max DNA polymerase delta catalytic subunit (LOC100817379), transcript variant X3, mRNA	DNA polymerase delta catalytic subunit(LOC100817379)	coding protein	psRNATarget
XM_014776477.1	ncRNA:20   CUCG-GUACCUGCUUCUGCAC   1   |||=-|||||||||||||||| targets:148   GAGUUCAUGGACGAAGACGUG   168 Target Full Sequence	3.0	PREDICTED: Glycine max DNA polymerase delta catalytic subunit (LOC100817379), transcript variant X2, mRNA	DNA polymerase delta catalytic subunit(LOC100817379)	coding protein	psRNATarget
XM_014776479.1	ncRNA:20   CUCG-GUACCUGCUUCUGCAC   1   |||=-|||||||||||||||| targets:148   GAGUUCAUGGACGAAGACGUG   168 Target Full Sequence	3.0	PREDICTED: Glycine max DNA polymerase delta catalytic subunit (LOC100817379), transcript variant X4, mRNA	DNA polymerase delta catalytic subunit(LOC100817379)	coding protein	psRNATarget
XM_014776476.1	ncRNA:20   CUCG-GUACCUGCUUCUGCAC   1   |||=-|||||||||||||||| targets:148   GAGUUCAUGGACGAAGACGUG   168 Target Full Sequence	3.0	PREDICTED: Glycine max DNA polymerase delta catalytic subunit (LOC100817379), transcript variant X1, mRNA	DNA polymerase delta catalytic subunit(LOC100817379)	coding protein	psRNATarget
AF020193.1	ncRNA:20   CUCG-GUACCUGCUUCUGCAC   1   |||=-|||||||||||||||| targets:137   GAGUUCAUGGACGAAGACGUG   157 Target Full Sequence	3.0	Glycine max DNA polymerase delta (Pol delta) mRNA, complete cds	NA	coding protein	psRNATarget
NM_001251764.1	ncRNA:20   CUCG-GUACCUGCUUCUGCAC   1   |||=-|||||||||||||||| targets:137   GAGUUCAUGGACGAAGACGUG   157 Target Full Sequence	3.0	Glycine max DNA polymerase delta (POLD1), mRNA	DNA polymerase delta(POLD1)	coding protein	psRNATarget