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BaseInfo

ncRNA ID novel_gma_miR7228
Species Glycine max
Class miRNA
Genome position Chr3:41819036-41819111 [+]
Reference genome Glycine_max_v2.0
Source SRR1451609
Length 22
Mature sequence(if miRNA) 1 - UUGUGCUGUGGUCUGUUUAACU - 22
Stem-loop(if miRNA) --      -U UG  C    -U    C   AUUU   UUG
  UUGUGC  G  GU UGUU  AACU AUA    UCA   U
  ||||||  |  || ||||  |||| |||    |||
  AAUAUG  U  CA ACAA  UUGG UAU    AGU   A
UC      UC GU  -    CU    U   -CAU   UAA
Stem-loop sequence UUGUGCUGUGGUCUGUUUAACUCAUAAUUUUCAUUGUAAAUUGAUACUAUUGGUUUCAACAACUGUCUGUAUAACU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006577129.2
ncRNA:22   UC--AAUUUGUCUGGUGUCGUGUU   1
  ||--||**||||||||||||||||
targets:2752   AGCUUUCCACAGACCACAGCACAA   2775

2.0 PREDICTED: Glycine max protein phosphatase 2C 32-like (LOC100776518), transcript variant X2, mRNA protein phosphatase 2C 32-like(LOC100776518) coding protein psRNATarget
XM_006577128.2
ncRNA:22   UC--AAUUUGUCUGGUGUCGUGUU   1
  ||--||**||||||||||||||||
targets:2844   AGCUUUCCACAGACCACAGCACAA   2867

2.0 PREDICTED: Glycine max protein phosphatase 2C 32-like (LOC100776518), transcript variant X1, mRNA protein phosphatase 2C 32-like(LOC100776518) coding protein psRNATarget
XM_003530241.3
ncRNA:22   UCAAUUUGUCUGGUGUCGUGUU   1
  ****|||||||*||||||||||
targets:46   CAGAAAACAGAACACAGCACAA   67

2.5 PREDICTED: Glycine max beta-glucosidase 11-like (LOC100781407), mRNA beta-glucosidase 11-like(LOC100781407) coding protein psRNATarget