ncRNA ID | novel_gma_miR7228 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr3:41819036-41819111 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451609 |
Length | 22 |
Mature sequence(if miRNA) | 1 - UUGUGCUGUGGUCUGUUUAACU - 22 |
Stem-loop(if miRNA) |
--      -U UG  C    -U    C   AUUU   UUG   UUGUGC  G  GU UGUU  AACU AUA    UCA   U   ||||||  |  || ||||  |||| |||    |||   AAUAUG  U  CA ACAA  UUGG UAU    AGU   A UC      UC GU  -    CU    U   -CAU   UAA |
Stem-loop sequence | UUGUGCUGUGGUCUGUUUAACUCAUAAUUUUCAUUGUAAAUUGAUACUAUUGGUUUCAACAACUGUCUGUAUAACU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_006577129.2 |
|
2.0 | PREDICTED: Glycine max protein phosphatase 2C 32-like (LOC100776518), transcript variant X2, mRNA | protein phosphatase 2C 32-like(LOC100776518) | coding protein | psRNATarget | |||||||||
XM_006577128.2 |
|
2.0 | PREDICTED: Glycine max protein phosphatase 2C 32-like (LOC100776518), transcript variant X1, mRNA | protein phosphatase 2C 32-like(LOC100776518) | coding protein | psRNATarget | |||||||||
XM_003530241.3 |
|
2.5 | PREDICTED: Glycine max beta-glucosidase 11-like (LOC100781407), mRNA | beta-glucosidase 11-like(LOC100781407) | coding protein | psRNATarget |