Search result

BaseInfo

ncRNA ID novel_gma_miR7226
Species Glycine max
Class miRNA
Genome position Chr4:47599940-47600106 [-]
Reference genome Glycine_max_v2.0
Source SRR1292928
Length 24
Mature sequence(if miRNA) 144 - AGAAGAAAAAAGAUGAGAUGAACU - 167
Stem-loop(if miRNA) --          A          A         AAACA       A  C     G         ---UU  AAGUUCACCAAUAU
  AGAAGAAAAA GAUGAGAUGA CUUUUUCAU     AAAAUAA UU UUCAU AGUUAAUUU     AG              A
  |||||||||| |||||||||| |||||||||     ||||||| || ||||| |||||||||     ||              A
  UCUUCUUUUU UUACUUUACU GAAGAGGUA     UUUUAUU AA AAGUA UCAAUUAAA     GA              C
AU          -          C         AUCAA       C  A     A         CAAUA  GUAGAAAAUCUCUU
Stem-loop sequence AGAAGAAAAAAGAUGAGAUGAACUUUUUCAUAAACAAAAAUAAAUUCUUCAUGAGUUAAUUUUUAGAAGUUCACCAAUAUAACUUCUCUAAAAGAUGAGAUAACAAAUUAACUAAUGAAAAACUUAUUUUAACUAAUGGAGAAGCUCAUUUCAUUUUUUUCUUCUUA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_003541440.3
ncRNA:24   UCAAGUAGAGUAGAAAAAAGAAGA   1
  |**|||||||||||||||||||||
targets:902   AACUCAUCUCAUCUUUUUUCUUCU   925

0.0 PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X1, mRNA probable anion transporter 6, chloroplastic(LOC100806856) coding protein psRNATarget
XM_006594197.2
ncRNA:24   UCAAGUAGAGUAGAAAAAAGAAGA   1
  |**|||||||||||||||||||||
targets:902   AACUCAUCUCAUCUUUUUUCUUCU   925

0.0 PREDICTED: Glycine max probable anion transporter 6, chloroplastic (LOC100806856), transcript variant X2, mRNA probable anion transporter 6, chloroplastic(LOC100806856) coding protein psRNATarget
XM_014764588.1
ncRNA:24   UCAAGUAGAG-UAGAAAAAAGAAGA   1
  |**|||||||-||||||||||||||
targets:114   AUCUCAUCUCUAUCUUUUUUCUUCU   138

2.0 PREDICTED: Glycine max ABC transporter G family member 28-like (LOC100794093), mRNA ABC transporter G family member 28-like(LOC100794093) coding protein psRNATarget
XM_003537621.3
ncRNA:24   UCAAGUAGAGUAGAAAAAAGAAGA   1
  ***||=||||*|||||||||||||
targets:96   CUAUCGUCUCUUCUUUUUUCUUCU   119

2.0 PREDICTED: Glycine max protein S-acyltransferase 10 (LOC100818912), mRNA protein S-acyltransferase 10(LOC100818912) coding protein psRNATarget
XM_003545424.3
ncRNA:21   AGUAGAGUAGAAAAAAGAAGA   1
  ||*||||||=|||||||||||
targets:1   UCCUCUCAUUUUUUUUCUUCU   21

2.5 PREDICTED: Glycine max SNF1-related protein kinase regulatory subunit beta-1 (LOC100789052), mRNA SNF1-related protein kinase regulatory subunit beta-1(LOC100789052) coding protein psRNATarget
XM_003519443.3
ncRNA:24   UCAAGUAGAGUAGAAAAAAGAAGA   1
  *|||=||=|=*|||||||||||||
targets:75   CGUUUAUUUUUUCUUUUUUCUUCU   98

3.0 PREDICTED: Glycine max SNF1-related protein kinase regulatory subunit beta-1 (LOC100793165), mRNA SNF1-related protein kinase regulatory subunit beta-1(LOC100793165) coding protein psRNATarget