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BaseInfo

ncRNA ID novel_gma_miR7217
Species Glycine max
Class miRNA
Genome position Chr20:33676156-33676264 [-]
Reference genome Glycine_max_v2.0
Source SRR1451609
Length 19
Mature sequence(if miRNA) 91 - UUAAUUUUAUAUAGUAGAU - 109
Stem-loop(if miRNA) --      --        UA      AAU  GU   A        UAUGGU      G
  UUAAUU  UUAUAUAG  GAUUAG   UA  UUA AUUUUUUA      AGAUUA G
  ||||||  ||||||||  ||||||   ||  ||| ||||||||      ||||||
  GAUUAG  AGUAUAUU  UUAAUU   AU  AAU UAAAGGAU      UUUGAU A
AG      AU        --      ---  UG   G        UUUGAU      A
Stem-loop sequence UUAAUUUUAUAUAGUAGAUUAGAAUUAGUUUAAAUUUUUUAUAUGGUAGAUUAGGAAUAGUUUUAGUUUUAGGAAAUGUAAGUUAUUAAUUUUAUAUGAUAGAUUAGGA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
BT099205.1
ncRNA:19   UAGAUGAUAUAUUUUAAUU   1
  |||*||||*||||||||||
targets:42   AUCCACUAAAUAAAAUUAA   60

2.5 Soybean clone JCVI-FLGm-23P23 unknown mRNA NA coding protein psRNATarget
XM_006600527.2
ncRNA:19   UAGAUGAUAUAUUUUAAUU   1
  ||*||=||||||||||||*
targets:1770   AUAUAUUAUAUAAAAUUAC   1788

3.0 PREDICTED: Glycine max transcription factor TCP17 (LOC102670246), transcript variant X1, mRNA transcription factor TCP17(LOC102670246) coding protein psRNATarget
XM_006600528.2
ncRNA:19   UAGAUGAUAUAUUUUAAUU   1
  ||*||=||||||||||||*
targets:1884   AUAUAUUAUAUAAAAUUAC   1902

3.0 PREDICTED: Glycine max transcription factor TCP17 (LOC102670246), transcript variant X3, mRNA transcription factor TCP17(LOC102670246) coding protein psRNATarget
XM_006600526.2
ncRNA:19   UAGAUGAUAUAUUUUAAUU   1
  ||*||=||||||||||||*
targets:1906   AUAUAUUAUAUAAAAUUAC   1924

3.0 PREDICTED: Glycine max transcription factor TCP17 (LOC102670246), transcript variant X2, mRNA transcription factor TCP17(LOC102670246) coding protein psRNATarget