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BaseInfo

ncRNA ID novel_gma_miR7173
Species Glycine max
Class miRNA
Genome position Chr18:48417606-48417715 [+]
Reference genome Glycine_max_v2.0
Source SRR1451607
Length 24
Mature sequence(if miRNA) 1 - AAUCAUGAUUCUGCUGUACUAGAG - 24
Stem-loop(if miRNA) --          CU C        --A      C      UGUUU      A    U
  AAUCAUGAUU  G UGUACUAG   GGGGUG GAAAAA     UACAAU GAAU A
  ||||||||||  | ||||||||   |||||| ||||||     |||||| ||||
  UUAGUGCUAA  U ACGUGAUC   CCCCAC CUUUUU     AUGUUA CUUG U
CU          AG A        ACC      A      --UUU      C    G
Stem-loop sequence AAUCAUGAUUCUGCUGUACUAGAGGGGUGCGAAAAAUGUUUUACAAUAGAAUUAUGGUUCCAUUGUAUUUUUUUUCACACCCCCCACUAGUGCAAUGAAAUCGUGAUUUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014772630.1
ncRNA:24   GAGA-UCAUGUCGUCUUAGUACUAA   1
  =|||-=|*|=|*|||||||||||||
targets:228   UUCUCGGCAUAACAGAAUCAUGAUU   252

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 10 (LOC100791642), transcript variant X1, mRNA cysteine-rich receptor-like protein kinase 10(LOC100791642) coding protein psRNATarget
XM_014772631.1
ncRNA:24   GAGA-UCAUGUCGUCUUAGUACUAA   1
  =|||-=|*|=|*|||||||||||||
targets:228   UUCUCGGCAUAACAGAAUCAUGAUU   252

3.0 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 10 (LOC100791642), transcript variant X2, mRNA cysteine-rich receptor-like protein kinase 10(LOC100791642) coding protein psRNATarget