ncRNA ID | novel_gma_miR7160 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr10:25223313-25223528 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451607;SRR1451609;SRR1451611 |
Length | 23 |
Mature sequence(if miRNA) | 1 - UAAAAAAAACCAAUGUUAACUGU - 23 |
Stem-loop(if miRNA) |
-UA         A        ------------------U  CAAUAGCAACACAUUCGUUAACAUCGGUUUUUUGAAAAAAUCGAUGUUAACUGUCAAUAAUAACACAUUCGUUA    AAAAAAACC AUGUUAAC                   GU                                                                          A    ||||||||| ||||||||                   ||                                                                          C    UUUUUUUGG UACAAUUG                   CA                                                                          A AUA         C        CUUACACAAUGAUAACUGU  AUUGUAGCCAAAAAAGUUUUUUGACUACAAUUGAUUGCAAUUGUAGCCAAAAAACAUUUUUUUUUUUUUGGGCU |
Stem-loop sequence | UAAAAAAAACCAAUGUUAACUGUCAAUAGCAACACAUUCGUUAACAUCGGUUUUUUGAAAAAAUCGAUGUUAACUGUCAAUAAUAACACAUUCGUUAACAUCGGGUUUUUUUUUUUUUACAAAAAACCGAUGUUAACGUUAGUUAACAUCAGUUUUUUGAAAAAACCGAUGUUAACUGUCAAUAGUAACACAUUCGUUAACAUCGGUUUUUUUAUA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
BT097688.1 |
|
2.5 | Soybean clone JCVI-FLGm-22M4 unknown mRNA | NA | coding protein | psRNATarget | |||||||||
NM_001317503.1 |
|
2.5 | Glycine max uncharacterized LOC100788810 (LOC100788810), mRNA | uncharacterized LOC100788810(LOC100788810) | coding protein | psRNATarget | |||||||||
XM_006600403.2 |
|
3.0 | PREDICTED: Glycine max uncharacterized LOC100811568 (LOC100811568), mRNA | uncharacterized LOC100811568(LOC100811568) | coding protein | psRNATarget |