| ncRNA ID | ath-miR8169 |
| Species | Arabidopsis thaliana |
| Class | miRNA |
| Genome position | chr3:8836256-8836384 [+] |
| Reference genome | TAIR10 |
| Source | miRBase |
| Length | 21 |
| Mature sequence(if miRNA) | 104 - AUAGACAGAGUCACUCACAGA - 124 |
| Stem-loop(if miRNA) |
U - AAC AAA GAG AUCA ---- -- UG U U AUAUCU CUG GAG GA UCUG GUGAG UUGCU GAUUUGA AU UAAA UUUU A |||||| ||| ||| || |||| ||||| ||||| ||||||| || |||| |||| UAUAGA GAC CUC CU AGAC UACUU AGCGG CUAAACU UG GUUU AAAA U - A --A --G AGA -AAA UAAU AA GU U G |
| Stem-loop sequence | AUAUCUUCUGGAGAACGAAAAUCUGGAGGUGAGAUCAUUGCUGAUUUGAAUUGUAAAUUUUUUAUGAAAAUUUUGUGGUAAUCAAAUCUAAUGGCGAAAAUUCAUAGACAGAGUCACUCACAGAGAUAU |
| Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| NM_122260.4 |
|
2.5 | Arabidopsis thaliana carboxyesterase 18 (CXE18), mRNA | carboxyesterase 18(CXE18) | coding protein | psRNATarget | |||||||||
| BX832120.1 |
|
2.5 | Arabidopsis thaliana Full-length cDNA Complete sequence from clone GSLTPGH52ZH07 of Hormone Treated Callus of strain col-0 of Arabidopsis thaliana (thale cress) | NA | coding protein | psRNATarget |
| 1 | PMID:24119003
"Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots"; Vidal EA, Moyano TC, Krouk G, Katari MS, Tanurdzic M, McCombie WR, Coruzzi GM, Gutierrez RA; BMC Genomics. 14:701(2013). |