ncRNA ID | novel_gma_miR7154 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr15:34192522-34192658 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451607 |
Length | 21 |
Mature sequence(if miRNA) | 117 - UUAGAGGAUCAAAUUAGGAUU - 137 |
Stem-loop(if miRNA) |
--      --G  A       A  CA  AC -   A      -- A  A AUACGUGAGCCCGAUUAGAGGU   UCUUAG   GA CCUCUAG GA  CC  U AUC CUAUUG  G CU C                      A   ||||||   || ||||||| ||  ||  | ||| ||||||  | || |                      A   AGGAUU   CU GGAGAUU CU  GG  U UGU CAAGUA  G UU G                      A UU      AAA  A       C  AG  -A G   A      AG -  - GGAUUAAUGCUAUUUGAGCAGG |
Stem-loop sequence | UCUUAGGGAACCUCUAGAGACACCACUAUCACUAUUGGACUACAUACGUGAGCCCGAUUAGAGGUAAAGGACGAGUUUAUCGUAAUUAGGGUUGGAAUGAACAUGUGUAGGGAUCCUUAGAGGAUCAAAUUAGGAUU |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
AK287337.1 |
|
3.0 | Glycine max cDNA, clone: GMFL01-50-G14 | NA | coding protein | psRNATarget | |||||||||
XM_003526592.3 |
|
3.0 | PREDICTED: Glycine max probable L-ascorbate peroxidase 6, chloroplastic (LOC100784258), transcript variant X1, mRNA | probable L-ascorbate peroxidase 6, chloroplastic(LOC100784258) | coding protein | psRNATarget | |||||||||
XM_003526591.3 |
|
3.0 | PREDICTED: Glycine max probable L-ascorbate peroxidase 6, chloroplastic (LOC100784258), transcript variant X2, mRNA | probable L-ascorbate peroxidase 6, chloroplastic(LOC100784258) | coding protein | psRNATarget |