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BaseInfo

ncRNA ID novel_gma_miR7154
Species Glycine max
Class miRNA
Genome position Chr15:34192522-34192658 [+]
Reference genome Glycine_max_v2.0
Source SRR1451607
Length 21
Mature sequence(if miRNA) 117 - UUAGAGGAUCAAAUUAGGAUU - 137
Stem-loop(if miRNA) --      --G  A       A  CA  AC -   A      -- A  A AUACGUGAGCCCGAUUAGAGGU
  UCUUAG   GA CCUCUAG GA  CC  U AUC CUAUUG  G CU C                      A
  ||||||   || ||||||| ||  ||  | ||| ||||||  | || |                      A
  AGGAUU   CU GGAGAUU CU  GG  U UGU CAAGUA  G UU G                      A
UU      AAA  A       C  AG  -A G   A      AG -  - GGAUUAAUGCUAUUUGAGCAGG
Stem-loop sequence UCUUAGGGAACCUCUAGAGACACCACUAUCACUAUUGGACUACAUACGUGAGCCCGAUUAGAGGUAAAGGACGAGUUUAUCGUAAUUAGGGUUGGAAUGAACAUGUGUAGGGAUCCUUAGAGGAUCAAAUUAGGAUU

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
AK287337.1
ncRNA:21   UUAGGAUUAAACUAGGAGAUU   1
  =|*||*||||||||||||||=
targets:1051   GAGCCAAAUUUGAUCCUCUAG   1071

3.0 Glycine max cDNA, clone: GMFL01-50-G14 NA coding protein psRNATarget
XM_003526592.3
ncRNA:21   UUAGGAUUAAACUAGGAGAUU   1
  =|*||*||||||||||||||=
targets:1222   GAGCCAAAUUUGAUCCUCUAG   1242

3.0 PREDICTED: Glycine max probable L-ascorbate peroxidase 6, chloroplastic (LOC100784258), transcript variant X1, mRNA probable L-ascorbate peroxidase 6, chloroplastic(LOC100784258) coding protein psRNATarget
XM_003526591.3
ncRNA:21   UUAGGAUUAAACUAGGAGAUU   1
  =|*||*||||||||||||||=
targets:1219   GAGCCAAAUUUGAUCCUCUAG   1239

3.0 PREDICTED: Glycine max probable L-ascorbate peroxidase 6, chloroplastic (LOC100784258), transcript variant X2, mRNA probable L-ascorbate peroxidase 6, chloroplastic(LOC100784258) coding protein psRNATarget