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BaseInfo

ncRNA ID	ath-miR853
Species	Arabidopsis thaliana
Class	miRNA
Genome position	chr3:8346367-8346656 [+]
Reference genome	TAIR10
Source	miRBase
Length	22
Mature sequence(if miRNA)	50 - UCCCCUCUUUAGCUUGGAGAAG - 71
Stem-loop(if miRNA)	GAGA     AAUUAGGGUUGUUUCAAACAGGGUAAAGUGUUCCUGCUGCUCCCCUCUUUAGCUUGGAGAAGCCAGUAAAUAUCUUUCUCUUCAAGGAACUUGUGGGCCUCAAGAAAACCUGCUAUAAUUCUAGUUUUUCAACAUU     GGAAC                                                                                                                                        C     |||||                                                                                                                                        C     AGACA                                                                                                                                        U ---U     AAAACUGUUUAUGUCCCAUUCCCAAUUUUCUCAAAGUACGACGAGGGGAAAGGCCAACGUCUCCGGUUCAUUUAUAGAAACUCCUUCAAGGUAAGAGGUAAGAAUUCCCAUUCCUCAACAACGACUAUAGUCUUCC
Stem-loop sequence	GAGAGGAACAAUUAGGGUUGUUUCAAACAGGGUAAAGUGUUCCUGCUGCUCCCCUCUUUAGCUUGGAGAAGCCAGUAAAUAUCUUUCUCUUCAAGGAACUUGUGGGCCUCAAGAAAACCUGCUAUAAUUCUAGUUUUUCAACAUUCCUCCUUCUGAUAUCAGCAACAACUCCUUACCCUUAAGAAUGGAGAAUGGAACUUCCUCAAAGAUAUUUACUUGGCCUCUGCAACCGGAAAGGGGAGCAGCAUGAAACUCUUUUAACCCUUACCCUGUAUUUGUCAAAAACAGAU

Reference

1	PMID:17182867 "A diverse and evolutionarily fluid set of microRNAs in Arabidopsis thaliana"; Rajagopalan R, Vaucheret H, Trejo J, Bartel DP; Genes Dev. 20:3407-3425(2006).
2	PMID:17299599 "High-throughput sequencing of Arabidopsis microRNAs: evidence for frequent birth and death of MIRNA genes"; Fahlgren N, Howell MD, Kasschau KD, Chapman EJ, Sullivan CM, Cumbie JS, Givan SA, Law TF, Grant SR, Dangl JL, Carrington JC; PLoS One. 2:e219(2007).