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BaseInfo

ncRNA ID novel_gma_miR7050
Species Glycine max
Class miRNA
Genome position Chr20:40890015-40890158 [-]
Reference genome Glycine_max_v2.0
Source SRR1451607
Length 24
Mature sequence(if miRNA) 1 - AAGAAGUUUGAUUUAUUUUACCUC - 24
Stem-loop(if miRNA) --               C     C C   A           C    G        CUUCUUU       CUC
  GGUAAAAUGAAUCAA CUUCU U AUA GUUAAAAUUAA UUAU CACCUCAA       AGAAGUU   U
  ||||||||||||||| ||||| | ||| ||||||||||| |||| ||||||||       |||||||
  CCAUUUUAUUUAGUU GAAGA A UGU CAAUUUUGAUU AAUA GUGGAGUU       UCUUCAA   C
CU               U     A A   C           C    A        AUAAAUC       UUA
Stem-loop sequence GGUAAAAUGAAUCAACCUUCUCUCAUAAGUUAAAAUUAACUUAUGCACCUCAACUUCUUUAGAAGUUCUCUCAUUAACUUCUCUAAAUAUUGAGGUGAAUAACUUAGUUUUAACCUGUAAAAGAAGUUUGAUUUAUUUUACCUC

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006582823.2
ncRNA:24   CUCCAUUUUAUUUAGUUUGAAGAA   1
  *|||*|||||=|||||||||||||
targets:917   AAGGAAAAAUGAAUCAAACUUCUU   940

1.0 PREDICTED: Glycine max phosphopantothenoylcysteine decarboxylase-like (LOC100778368), transcript variant X2, mRNA phosphopantothenoylcysteine decarboxylase-like(LOC100778368) coding protein psRNATarget
XM_006590432.2
ncRNA:24   CUC--CAUUUUAUUUAGUUUGAAGAA   1
  |||--|-|||||||||||||=||||*
targets:4008   GAGAAG-AAAAUAAAUCAAAUUUCUC   4032

2.5 PREDICTED: Glycine max protein SPA1-RELATED 2-like (LOC100778303), mRNA protein SPA1-RELATED 2-like(LOC100778303) coding protein psRNATarget
XM_003516669.3
ncRNA:24   CUC--CAUUUUAUUUAGUUUGAAGAA   1
  |||--|-|||||||||||||=||||*
targets:4038   GAGAAG-AAAAUAAAUCAAAUUUCUC   4062

2.5 PREDICTED: Glycine max protein SPA1-RELATED 2-like (LOC100784300), mRNA protein SPA1-RELATED 2-like(LOC100784300) coding protein psRNATarget
XM_006582997.2
ncRNA:24   CUCCAUUUUAUUUAGUUUGAAGAA   1
  **||*||||*||||||||=|||||
targets:1394   UUGGGAAAACAAAUCAAAUUUCUU   1417

2.5 PREDICTED: Glycine max peroxisome biogenesis protein 2-like (LOC100800681), transcript variant X4, mRNA peroxisome biogenesis protein 2-like(LOC100800681) coding protein psRNATarget
XM_003530091.3
ncRNA:24   CUCCAUUUUAUUUAGUUUGAAGAA   1
  **||*||||*||||||||=|||||
targets:1397   UUGGGAAAACAAAUCAAAUUUCUU   1420

2.5 PREDICTED: Glycine max peroxisome biogenesis protein 2-like (LOC100800681), transcript variant X3, mRNA peroxisome biogenesis protein 2-like(LOC100800681) coding protein psRNATarget
XM_006582996.2
ncRNA:24   CUCCAUUUUAUUUAGUUUGAAGAA   1
  **||*||||*||||||||=|||||
targets:1405   UUGGGAAAACAAAUCAAAUUUCUU   1428

2.5 PREDICTED: Glycine max peroxisome biogenesis protein 2-like (LOC100800681), transcript variant X2, mRNA peroxisome biogenesis protein 2-like(LOC100800681) coding protein psRNATarget
XM_006582995.2
ncRNA:24   CUCCAUUUUAUUUAGUUUGAAGAA   1
  **||*||||*||||||||=|||||
targets:1408   UUGGGAAAACAAAUCAAAUUUCUU   1431

2.5 PREDICTED: Glycine max peroxisome biogenesis protein 2-like (LOC100800681), transcript variant X1, mRNA peroxisome biogenesis protein 2-like(LOC100800681) coding protein psRNATarget
XM_003533442.3
ncRNA:24   CUCCAUUUUAUUUAGUUUGAAGAA   1
  *|***|||||||||||||=||||*
targets:3   AAAUAAAAAUAAAUCAAAUUUCUC   26

2.5 PREDICTED: Glycine max diphthamide biosynthesis protein 1-like (LOC100797181), mRNA diphthamide biosynthesis protein 1-like(LOC100797181) coding protein psRNATarget