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BaseInfo

ncRNA ID novel_gma_miR7047
Species Glycine max
Class miRNA
Genome position Chr7:32505110-32505308 [+]
Reference genome Glycine_max_v2.0
Source SRR1451606
Length 25
Mature sequence(if miRNA) 1 - UAUUAGAGGUUGCACUAGAACGAUU - 25
Stem-loop(if miRNA) --          UG        C             C   C          G                     C     A          -         
  UAUUAGAGGU  CACUAGAA GAUUAGCACCAAU UGU CUUCUUCCUU UUUACCAGCUCAAUAUCUUUC UUUCA CUUUUGUUUU GUAAAUUACA
  ||||||||||  |||||||| ||||||||||||| ||| |||||||||| ||||||||||||||||||||| ||||| |||||||||| |||||||||G
  AUAAUCUCCA  GUGAUCUU UUAGUUGUGGUUA GCA GGAGAAGGAG AGAUGGUCGAGUUAUAGAAAG AAAGU GGAAACGAAA CAUUUGAUGU
AA          GA        C             A   C          G                     C     -          A         
Stem-loop sequence UAUUAGAGGUUGCACUAGAACGAUUAGCACCAAUCUGUCCUUCUUCCUUGUUUACCAGCUCAAUAUCUUUCCUUUCAACUUUUGUUUUGUAAAUUACAGUGUAGUUUACAAAAGCAAAGGUGAAACGAAAGAUAUUGAGCUGGUAGAGGAGGAAGAGGCACGAAUUGGUGUUGAUUCUUCUAGUGAGACCUCUAAUAAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_006591670.1
ncRNA:25   UUAGCAAGAUCACGUUGGAGAUUAU   1
  |||=|||||||||||||||||||||
targets:97   AAUUGUUCUAGUGCAACCUCUAAUA   121

0.0 PREDICTED: Glycine max glutathione gamma-glutamylcysteinyltransferase 3-like (LOC100778828), mRNA glutathione gamma-glutamylcysteinyltransferase 3-like(LOC100778828) coding protein psRNATarget
XM_006586135.2
ncRNA:25   UUAGCAAGAUCACGUUGGAGAUUAU   1
  =||=|||||||||||||||||||||
targets:841   GAUUGUUCUAGUGCAACCUCUAAUA   865

0.0 PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X2, mRNA SNF2 domain-containing protein CLASSY 3-like(LOC100806733) coding protein psRNATarget
XM_014779469.1
ncRNA:25   UUAGCAAGAUCACGUUGGAGAUUAU   1
  =||=|||||||||||||||||||||
targets:841   GAUUGUUCUAGUGCAACCUCUAAUA   865

0.0 PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 3-like (LOC100806733), transcript variant X1, mRNA SNF2 domain-containing protein CLASSY 3-like(LOC100806733) coding protein psRNATarget
XM_014764387.1
ncRNA:25   UUAGCAAGAUCACGUUGGAGAUUAU   1
  =|*=||*|||||||||||||||=||
targets:686   GACUGUGCUAGUGCAACCUCUAGUA   710

2.5 PREDICTED: Glycine max SNF2 domain-containing protein CLASSY 4-like (LOC100812737), mRNA SNF2 domain-containing protein CLASSY 4-like(LOC100812737) coding protein psRNATarget