ncRNA ID | novel_gma_miR7045 |
Species | Glycine max |
Class | miRNA |
Genome position | Chr7:11367303-11367444 [+] |
Reference genome | Glycine_max_v2.0 |
Source | SRR1451606 |
Length | 24 |
Mature sequence(if miRNA) | 1 - GUUUUCAAAAAAUCGUCUUAGAAA - 24 |
Stem-loop(if miRNA) |
--    UC     A            AAUAUA    U                                    G   GUUU  AAAAA UCGUCUUAGAAA      UCUU CUAAGAUGGUUGUUAGCUAAGAACCGUCUUAGAAGG U   ||||  ||||| ||||||||||||      |||| ||||||||||||||||||||||||||||||||||||   CAAA  UUUUU AGUAGAAUCUUU      AGAA GAUUCUGCCAACAAUCGAUUUUUGGCAGAAUCUUCU A AA    --     C            ---CCA    -                                    C |
Stem-loop sequence | GUUUUCAAAAAAUCGUCUUAGAAAAAUAUAUCUUUCUAAGAUGGUUGUUAGCUAAGAACCGUCUUAGAAGGGUACUCUUCUAAGACGGUUUUUAGCUAACAACCGUCUUAGAAGAACCUUUCUAAGAUGACUUUUUAAACAA |
Target Acc | Alignment | Exception | Target Description | Target Gene Name | Target Type | Method | |||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
XM_014768380.1 |
|
2.0 | PREDICTED: Glycine max probable protein phosphatase 2C 11 (LOC100779272), transcript variant X1, mRNA | probable protein phosphatase 2C 11(LOC100779272) | coding protein | psRNATarget | |||||||||
XM_014768381.1 |
|
2.0 | PREDICTED: Glycine max probable protein phosphatase 2C 11 (LOC100779272), transcript variant X2, mRNA | probable protein phosphatase 2C 11(LOC100779272) | coding protein | psRNATarget | |||||||||
XM_006602706.2 |
|
2.0 | PREDICTED: Glycine max uncharacterized LOC100819614 (LOC100819614), mRNA | uncharacterized LOC100819614(LOC100819614) | coding protein | psRNATarget | |||||||||
XM_014770737.1 |
|
2.0 | PREDICTED: Glycine max uncharacterized LOC102669442 (LOC102669442), mRNA | uncharacterized LOC102669442(LOC102669442) | coding protein | psRNATarget |