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BaseInfo

ncRNA ID novel_gma_miR7045
Species Glycine max
Class miRNA
Genome position Chr7:11367303-11367444 [+]
Reference genome Glycine_max_v2.0
Source SRR1451606
Length 24
Mature sequence(if miRNA) 1 - GUUUUCAAAAAAUCGUCUUAGAAA - 24
Stem-loop(if miRNA) --    UC     A            AAUAUA    U                                    G
  GUUU  AAAAA UCGUCUUAGAAA      UCUU CUAAGAUGGUUGUUAGCUAAGAACCGUCUUAGAAGG U
  ||||  ||||| ||||||||||||      |||| ||||||||||||||||||||||||||||||||||||
  CAAA  UUUUU AGUAGAAUCUUU      AGAA GAUUCUGCCAACAAUCGAUUUUUGGCAGAAUCUUCU A
AA    --     C            ---CCA    -                                    C
Stem-loop sequence GUUUUCAAAAAAUCGUCUUAGAAAAAUAUAUCUUUCUAAGAUGGUUGUUAGCUAAGAACCGUCUUAGAAGGGUACUCUUCUAAGACGGUUUUUAGCUAACAACCGUCUUAGAAGAACCUUUCUAAGAUGACUUUUUAAACAA

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014768380.1
ncRNA:24   AAAGAUUCUGCUAAAAAACUUUUG   1
  ||||*||*|||||||||||||||=
targets:96   UUUCAAAAACGAUUUUUUGAAAAU   119

2.0 PREDICTED: Glycine max probable protein phosphatase 2C 11 (LOC100779272), transcript variant X1, mRNA probable protein phosphatase 2C 11(LOC100779272) coding protein psRNATarget
XM_014768381.1
ncRNA:24   AAAGAUUCUGCUAAAAAACUUUUG   1
  ||||*||*|||||||||||||||=
targets:96   UUUCAAAAACGAUUUUUUGAAAAU   119

2.0 PREDICTED: Glycine max probable protein phosphatase 2C 11 (LOC100779272), transcript variant X2, mRNA probable protein phosphatase 2C 11(LOC100779272) coding protein psRNATarget
XM_006602706.2
ncRNA:24   AAAGAUUCUGCUAAAAAACUUUUG   1
  ***=*||||=|||||||||||||=
targets:2455   CAGUAAAGAUGAUUUUUUGAAAAU   2478

2.0 PREDICTED: Glycine max uncharacterized LOC100819614 (LOC100819614), mRNA uncharacterized LOC100819614(LOC100819614) coding protein psRNATarget
XM_014770737.1
ncRNA:24   AAAGAUUCUGCUAAAAAACUUUUG   1
  ***=*||||=|||||||||||||=
targets:2311   CAGUAAAGAUGAUUUUUUGAAAAU   2334

2.0 PREDICTED: Glycine max uncharacterized LOC102669442 (LOC102669442), mRNA uncharacterized LOC102669442(LOC102669442) coding protein psRNATarget