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BaseInfo

ncRNA ID novel_gma_miR7038
Species Glycine max
Class miRNA
Genome position Chr6:37777901-37777971 [+]
Reference genome Glycine_max_v2.0
Source SRR1451606
Length 23
Mature sequence(if miRNA) 1 - AGCCUUGUAGAUAAUUGAAUACC - 23
Stem-loop(if miRNA) --      GUA    A       ----CC    AAGAG
  AGCCUU   GAUA UUGAAUA      UGCC     A
  ||||||   |||| |||||||      ||||
  UUGGAG   UUAU AACUUAU      AUGG     U
GA      -AA    A       AUAACA    AAAAA
Stem-loop sequence AGCCUUGUAGAUAAUUGAAUACCUGCCAAGAGAUAAAAAGGUAACAAUAUAUUCAAAUAUUAAGAGGUUAG

Targets Info

Target Acc Alignment Exception Target Description Target Gene Name Target Type Method
XM_014771297.1
ncRNA:23   CCAUAAGUUAAUAGAUGUUCCGA   1
  |||-||||||||||*|||||||*
targets:2093   GGU-UUCAAUUAUCAACAAGGCA   2114

2.5 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 3 (LOC100787359), transcript variant X3, mRNA cysteine-rich receptor-like protein kinase 3(LOC100787359) coding protein psRNATarget
XM_014771296.1
ncRNA:23   CCAUAAGUUAAUAGAUGUUCCGA   1
  |||-||||||||||*|||||||*
targets:2104   GGU-UUCAAUUAUCAACAAGGCA   2125

2.5 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 3 (LOC100787359), transcript variant X2, mRNA cysteine-rich receptor-like protein kinase 3(LOC100787359) coding protein psRNATarget
XM_003551985.3
ncRNA:23   CCAUAAGUUAAUAGAUGUUCCGA   1
  |||-||||||||||*|||||||*
targets:2206   GGU-UUCAAUUAUCAACAAGGCA   2227

2.5 PREDICTED: Glycine max cysteine-rich receptor-like protein kinase 3 (LOC100787359), transcript variant X1, mRNA cysteine-rich receptor-like protein kinase 3(LOC100787359) coding protein psRNATarget
BT089108.1
ncRNA:23   CCAUAAGUUAAUAGAUGUUCCGA   1
  ***|||*||||||*|||||||||
targets:489   UAAAUUGAAUUAUGUACAAGGCU   511

2.5 Soybean clone JCVI-FLGm-1I19 unknown mRNA NA coding protein psRNATarget